作物学报 ›› 2023, Vol. 49 ›› Issue (5): 1249-1261.doi: 10.3724/SP.J.1006.2023.24122
陈伊航1,2(), 唐朝臣1, 张雄坚1, 姚祝芳1, 江炳志1, 王章英1,*()
CHEN Yi-Hang1,2(), TANG Chao-Chen1, ZHANG Xiong-Jian1, YAO Zhu-Fang1, JIANG Bing-Zhi1, WANG Zhang-Ying1,*()
摘要:
为更好地保存、研究和利用甘薯种质资源, 本研究以国家甘薯种质资源圃(广州)保存的1091份甘薯种质为材料, 分别采用欧氏距离和Nei’s距离进行NJ聚类分组, 组内随机取样, 构建核心种质。利用均值、方差、香农多样性指数、变异系数等指标对核心种质的表型性状数据进行代表性评价, 以及利用有效等位基因、Nei’s遗传多样性指数、Shannon’s多样性指数等指标对核心种质的SSR分子标记数据进行代表性评价; 并利用主成分分析对核心种质进行确认。结果表明, 构建的甘薯核心种质包含289份材料, 占全部种质的26.49%; 在P<0.05概率下, 核心种质中表型性状以及SSR分子标记的相关指标与全部种质无显著差异, 且二者的表型频率分布基本一致; 主成分分析表明核心种质具有与全部种质相似的遗传多样性和群体结构。建立的甘薯核心种质很好地代表了全部种质的遗传变异和群体结构, 可为甘薯的品种改良、优良基因挖掘以及种质创新奠定良好基础。
[1] | 陆漱韵, 刘庆昌, 李惟基. 甘薯育种学. 北京: 中国农业出版社, 1998. pp 19-27. |
Lu S Y, Liu Q C, Li W J. Sweetpotato Breeding. Beijing: China Agriculture Press, 1998. pp 19-27. (in Chinese) | |
[2] | 房伯平, 张雄坚, 陈景益, 安康. 我国甘薯种质资源研究的历史与现状. 广东农业科学, 2004, (增刊1): 3-5. |
Fang B P, Zhang X J, Chen J Y, An K. The history and status of sweetpotato germplasm research in China. Guangdong Agric Sci, 2004, (S1): 3-5. (in Chinese with English abstract) | |
[3] | Frankel O H, Brown A H D. Plant genetic resources today:a critical appraisal. In: Holden J H W, Williams J T, eds. Crop Genetic Resources:Conservation and Evaluation. London: George Allen and Unwin, 1984. pp 249-257. |
[4] | 张洪亮, 李自超, 曹永生, 裘宗恩, 余萍, 王象坤. 表型水平上检验水稻核心种质的参数比较. 作物学报, 2003, 29: 252-257. |
Zhang H L, Li Z C, Cao Y S, Qiu Z E, Yu P, Wang X K. Comparison of parameters for testing the rice core collection in phenotype. Acta Agron Sin, 2003, 29: 252-257. (in Chinese with English abstract) | |
[5] |
Hao C Y, Zhang X Y, Wang L F, Dong Y S, Shang X W, Jia J Z. Genetic diversity and core collection evaluations in common wheat germplasm from the northwestern spring wheat region in China. Mol Breed, 2006, 17: 69-77.
doi: 10.1007/s11032-005-2453-6 |
[6] | 姚启伦, 方平, 杨克诚, 潘光堂. 基于SSR标记构建西南玉米地方品种核心种质的方法. 湖南农业大学学报(自然科学版), 2009, 35(3): 225-228. |
Yao Q L, Fang P, Yang K C, Pan G T. Methods of constructing a core collection of maize landraces in southwest China based on SSR data. J Hunan Agric Univ (Nat Sci), 2009, 35(3): 225-228. (in Chinese with English abstract) | |
[33] | Huang Y Q, Yin G T, Yang J C, Yu N, Zou W T, Li R S. Developing a mini core germplasm of Pheobe bournei based on SSR molecular marker. Mol Plant Breed, 2020, 18: 2641-2648. (in Chinese with English abstract) |
[34] | 中华人民共和国农业部. 农作物种质资源鉴定技术规程甘薯, NY/T 1320-2007, 2007. |
Ministry of Agriculture, The People’s Republic of China. Technical specification for identification of crop germplasm resources-sweetpotato [Ipomoea batatas (L.) Lam.], NY/TNY/T 1320-2007, 2007 (in Chinese) | |
[35] | 黎裕, 王天宇. 美国植物种质资源保护与研究利用. 作物杂志, 2018, (6): 1-9. |
Li Y, Wang T Y. Conservation and utilization of American plant germplasm resources. Crops, 2018, (6): 1-9. (in Chinese) | |
[36] |
Oh J H, Lee Y J, Byeon E J, Kang B C, Kyeoung D S, Kim C K. Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants. 3 Biotech, 2018, 8: 115.
doi: 10.1007/s13205-018-1140-3 |
[37] |
Han W L, Zhao J Y, Deng X J, Gu A X, Li D L, Wang Y X, Lu X S, Zu Q L, Chen Q, Chen Q J, Zhang J F, Qu Y Y. Quantitative trait locus mapping and identification of candidate genes for resistance to Fusarium wilt race 7 using a resequencing- based high density genetic bin map in a recombinant inbred line population of Gossypium barbadense. Front Plant Sci, 2022, 13: 815643.
doi: 10.3389/fpls.2022.815643 |
[38] |
Yamakawa H, Haque E, Tanaka M, Takagi H, Tamiya S. Polyploid QTL-seq towards rapid development of tightly linked DNA markers for potato and sweetpotato breeding through whole genome resequencing. Plant Biotechnol J, 2021, 19: 2040-2051.
doi: 10.1111/pbi.13633 pmid: 34008333 |
[7] |
刘艳阳, 梅鸿献, 杜振伟, 武轲, 郑永战, 崔向华, 郑磊. 基于表型和SSR分子标记构建芝麻核心种质. 中国农业科学, 2017, 50: 2433-2441.
doi: 10.3864/j.issn.0578-1752.2017.13.003 |
Liu Y Y, Mei H X, Du Z W, Wu K, Zheng Y Z, Cui X H, Zheng L. Construction of core collection of sesame based on phenotype and molecular markers. Sci Agric Sin, 2017, 50: 2433-2441. (in Chinese with English abstract)
doi: 10.3864/j.issn.0578-1752.2017.13.003 |
|
[8] | 刘中华, 林志坚, 李华伟, 许泳清, 李国良, 邱永祥, 邱思鑫, 汤浩. 甘薯种质资源遗传多样性的ISSR分析. 南方农业学报, 2019, 50: 2392-2400. |
Liu Z H, Lin Z J, Li H W, Xu Y Q, Li G L, Qiu Y X, Qiu S X, Tang H. Genetic diversity analysis of sweetpotato [Ipomoea batatas (L.) Lam.] by ISSR molecular markers. J Southern Agric, 2019, 50: 2392-2400. (in Chinese with English abstract) | |
[9] | 李慧峰, 陈天渊, 黄咏梅, 吴翠荣, 李彦青, 滑金锋, 范继征. 甘薯种质资源形态标记遗传多样性分析. 西南农业学报, 2015, 28: 2401-2407. |
Li H F, Chen T Y, Huang Y M, Wu C R, Li Y Q, Hua J F, Fan J Z. Genetic diversity of sweetpotato germplasm resources revealed by morphological traits. Southwest China J Agric Sci, 2015, 28: 2401-2407. (in Chinese with English abstract) | |
[10] | 易燚波, 岑亮, 郭小路, 张启堂, 傅玉凡, 唐云明. 甘薯种质资源的遗传多样性分析. 西南大学学报(自然科学版), 2008, 30(4): 156-162. |
Yi Y B, Cen L, Guo X L, Zhang Q T, Fu Y F, Tang Y M. Genetic diversity of sweetpotato germplasm resources. J Southwest Univ (Nat Sci), 2008, 30(4): 156-162 (in Chinese with English abstract). | |
[11] |
Wang Z Y, Li J, Luo Z X, Huang L F, Chen X L, Fang B P, Li Y J, Chen J Y, Zhang X J. Characterization and development of EST-derived SSR markers in cultivated sweetpotato (Ipomoea batatas). BMC Plant Biol, 2011, 11: 139-139.
doi: 10.1186/1471-2229-11-139 pmid: 22011271 |
[12] | 罗忠霞, 房伯平, 李茹, 王章英, 黄立飞, 陈景益, 张雄坚, 李育军, 陈新亮, 黄实辉. 基于EST-SSR标记的甘薯种质资源DNA指纹图谱构建. 植物遗传资源学报, 2014, 15: 810-814. |
Luo Z X, Fang B P, Li R, Wang Z Y, Huang L F, Chen J Y, Zhang X J, Li Y J, Chen X L, Huang S H. Construction of DNA fingerprint database based on EST-SSR markers for sweetpotato germplasm. J Plant Genet Resour, 2014, 15: 810-814. (in Chinese with English abstract) | |
[13] | 王建成, 胡晋, 黄歆贤, 徐盛春. 植物遗传资源核心种质新概念与应用进展. 种子, 2008, 27(5): 47-50. |
Wang J C, Hu J, Huang X X, Xu S C. New concept and application on core collection of plant germplasm resources. Seed, 2008, 27(5): 47-50. (in Chinese with English abstract) | |
[14] | 郑福顺, 王晓敏, 李国花, 李洪磊, 周鹏泽, 王林, 白圣懿, 刘珮君, 张雪艳, 胡新华, 付金军, 高艳明, 李建设. 基于表型性状的宁夏番茄种质资源核心种质构建. 浙江大学学报(农业与生命科学版), 2021, 47: 171-181. |
Zheng F S, Wang X M, Li G H, Li H L, Zhou P Z, Wang L, Bai S Y, Liu P J, Zhang X Y, Hu X H, Fu J J, Gao Y M, Li J S. Core collection construction of Ningxia tomato germplasm resources based on phenotypic traits. J Zhejiang Univ (Agric Life Sci), 2021, 47: 171-181. (in Chinese with English abstract) | |
[15] | 汪磊, 王姣梅, 汪魏, 王玲, 王力军, 严兴初, 谭美莲. 基于表型多样性构建向日葵核心种质. 中国油料作物学报, 2021, 43: 1052-1060. |
Wang L, Wang J M, Wang W, Wang L, Wang L J, Yan X C, Tan M L. Development of a core collection in sunflower (Helianthus annuus L.) germplasm using phenotypic diversity. Chin J Oil Crop Sci, 2021, 43: 1052-1060 (in Chinese with English abstract). | |
[16] | 侯志强, 王丽慧, 赵孟良, 杨世鹏, 孙雪梅, 高洁铭, 钟启文. 基于表型数据的菊芋核心种质初步构建. 分子植物育种, 2021, 19: 3463-3472. |
Hou Z Q, Wang L H, Zhao M L, Yang S P, Sun X M, Gao J M, Zhong Q W. Preliminary construction of core collection of Jerusalem artichoke based on phenotypic data. Mol Plant Breed, 2021, 19: 3463-3472. (in Chinese with English abstract) | |
[17] | 徐超华, 刘新龙, 毛钧, 刘洪博, 林秀琴, 陆鑫, 苏火生. 基于SSR分子标记数据构建割手密核心种质库. 湖南农业大学学报(自然科学版), 2020, 46: 657-663. |
Xu C H, Liu X L, Mao J, Liu H B, Lin X Q, Lu X, Su H S. Construction of a core-collection of Saccharum spontaneum based on SSR molecular markers. J Hunan Agric Univ (Nat Sci), 2020, 46: 657-663. (in Chinese with English abstract) | |
[18] | 张馨方, 张树航, 李颖, 郭燕, 王广鹏. 基于SSR标记构建燕山板栗核心种质. 华北农学报, 2021, 36(增刊1): 31-38. |
Zhang X F, Zhang S H, Li Y, Guo Y, Wang G P. Construction of core collection of Yanshan chestnut germplasm based on SSR markers. Acta Agric Boreali-Sin, 2021, 36(S1): 31-38. (in Chinese with English abstract)
doi: 10.7668/hbnxb.20192435 |
|
[19] | 李金龙, 范昱, 赵梦雨, 康珍, 杨克理, 张凯旋, 周美亮. 基于表型性状和SSR分子标记构建甜荞初级核心种质. 植物遗传资源学报, 2021, 22: 1240-1247. |
Li J L, Fan Y, Zhao M Y, Kang Z, Yang K L, Zhang K X, Zhou M L. Construction of primary core collection of buckwheat germplasm resources based on Phenotypic traits and SSR. J Plant Genet Resour, 2021, 22: 1240-1247 (in Chinese with English abstract). | |
[20] |
Luan M B, Chen Y M, Wang X F, Xu Y, Sun Z M, Chen J H, Wang J S. Core collection of ramie comprising 1151 germplasms based on simple sequence repeats and phenotypic markers. Braz J Bot, 2018, 41: 859-866.
doi: 10.1007/s40415-018-0504-6 |
[21] |
Wang X L, Cao Z L, Gao C J, Li K. Strategy for the construction of a core collection for Pinus yunnanensis Franch. to optimize timber based on combined phenotype and molecular marker data. Genet Resour Crop Evol, 2021, 68: 3219-3240.
doi: 10.1007/s10722-021-01182-9 |
[22] |
Sa K J, Kim D M, Oh J S, Park H, Ju K L. Construction of a core collection of native Perilla germplasm collected from South Korea based on SSR markers and morphological characteristics. Sci Rep, 2021, 11: 23891.
doi: 10.1038/s41598-021-03362-0 |
[23] | 张允刚, 房伯平. 甘薯种质资源描述规范和数据标准. 北京: 中国农业出版社, 2006. pp 10-60. |
Zhang Y G, Fang B P. Descriptors and Data Standard for Sweetpotato [Ipomoea batatas (L.) Lam.]. Beijing: China Agriculture Press, 2006. pp 10-60. (in Chinese) | |
[24] |
Meng Y S, Zhao N, Hui L I, Zhai H, Shao-Zhen H E, Liu Q C. SSR fingerprinting of 203 sweetpotato (Ipomoea batatas (L.) Lam.) varieties. J Integr Agric, 2018, 17: 86-93.
doi: 10.1016/S2095-3119(17)61687-3 |
[25] |
Hu J, Zhu J, Xu H M. Methods of constructing core collections by stepwise clustering with three sampling strategies based on the genotypic values of crops. Theor Appl Genet, 2000, 101: 264-268.
doi: 10.1007/s001220051478 |
[26] | 刘遵春, 张春雨, 张艳敏, 张小燕, 吴传金, 王海波, 石俊, 陈学森. 利用数量性状构建新疆野苹果核心种质的方法. 中国农业科学, 2010, 43: 358-370. |
Liu Z C, Zhang C Y, Zhang Y M, Zhang X Y, Wu C J, Wang H B, Shi J, Chen X S. Study on method of constructing core collection of Malus sieversii based on quantitative traits. Sci Agric Sin, 2010, 43: 358-370. (in Chinese with English abstract) | |
[27] |
Katinas L, Crisci J V. Agriculture biogeography: an emerging discipline in search of a conceptual framework. Prog Phys Geog, 2019, 42: 513-529.
doi: 10.1177/0309133318776493 |
[28] |
闫彩霞, 王娟, 张浩, 李春娟, 宋秀霞, 孙全喜, 苑翠玲, 赵小波, 单世华. 基于表型性状构建中国花生地方品种骨干种质. 作物学报, 2020, 46: 520-531.
doi: 10.3724/SP.J.1006.2020.94101 |
Yan C X, Wang J, Zhang H, Li C J, Song X X, Sun Q X, Yuan C L, Zhao X B, Shan S H. Developing the key germplasm of Chinese peanut landraces based on phenotypic traits. Acta Agron Sin, 2020, 46: 520-531. (in Chinese with English abstract)
doi: 10.3724/SP.J.1006.2020.94101 |
|
[29] | 崔竣杰, 程蛟文, 曹毅, 胡开林. 基于SSR标记和表型性状构建苦瓜核心种质的研究. 中国蔬菜, 2022, (2): 25-32. |
Cui J J, Cheng J W, Cao Y, Hu K L. Construction of core bitter gourd germplasm based on SSR markers and phenotypic traits. China Veget, 2022, (2): 25-32. (in Chinese) | |
[30] |
Kumar A, Kumar S, Singh K B M, Prasad M, Thakur J K. Designing a mini-core collection effectively representing 3004 diverse rice accessions. Plant Commun, 2020, 1: 100049.
doi: 10.1016/j.xplc.2020.100049 |
[31] |
Rajput S G, Santra D K. Evaluation of genetic diversity of proso millet germplasm available in the United States using simple- sequence repeat markers. Crop Sci, 2016, 56: 2401-2409.
doi: 10.2135/cropsci2015.10.0644 |
[32] | 李秀诗, 付瑜华, 周祥, 黎青, 刘凡值, 杨成龙, 周明强. 基于表型性状的薏苡初级核心种质库构建. 热带作物学报, 2020, 41: 669-675. |
Li X S, Fu Y H, Zhou X, Li Q, Liu F Z, Yang C L, Zhou M Q. Establishment of Coix lacryma-jobi L. core germplasm collection based on phenotypic characters. Chin J Trop Crops, 2020, 41: 669-675. (in Chinese with English abstract) | |
[33] | 黄雨芹, 尹光天, 杨锦昌, 余纽, 邹文涛, 李荣生. 基于SSR分子标记的闽楠(Phoebe bournei)核心种质的构建. 分子植物育种, 2020, 18: 2641-2648. |
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