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作物学报 ›› 2018, Vol. 44 ›› Issue (9): 1290-1300.doi: 10.3724/SP.J.1006.2018.01290

• 研究论文 • 上一篇    下一篇

玉米隐花色素CRY1b和CRY2基因转录丰度对不同光质处理的响应

李红丹1,2,闫蕾1,2,孙蕾1,2,樊晓聪1,3,陈士瞻1,3,张燕1,3,郭林1,游光霞1,李庄1,2,杨宗举1,2,苏亮1,*,杨建平1,3,*   

  1. 1 中国农业科学院作物科学研究所, 北京 100081
    2 中国农业科学院研究生院, 北京 100081
    3 河南农业大学农学院, 河南郑州 450002
  • 收稿日期:2018-01-25 接受日期:2018-06-12 出版日期:2018-09-10 网络出版日期:2018-07-02
  • 通讯作者: 苏亮,杨建平
  • 基金资助:
    本研究由国家转基因生物新品种培育科技重大专项(2016ZX08010002-003-002);北京市自然科学基金(重点)项目(6151002);国家自然科学基金项目(31570268)资助

Transcription Abundances of CRY1b and CRY2 Genes in Response to Different Light Treatments in Maize

Hong-Dan LI1,2,Lei YAN1,2,Lei SUN1,2,Xiao-Cong FAN1,3,Shi-Zhan CHEN1,3,Yan ZHANG1,3,Lin GUO1,Guang-Xia YOU1,Zhuang LI1,2,Zong-Ju YANG1,2,Liang SU1,*,Jian-Ping YANG1,3,*   

  1. 1 Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China
    2 Graduate School, Chinese Academy of Agricultural Sciences, Beijing 100081, China
    3 College of Agronomy, Henan Agricultural University, Zhengzhou 450002, Henan, China
  • Received:2018-01-25 Accepted:2018-06-12 Published:2018-09-10 Published online:2018-07-02
  • Contact: Liang SU,Jian-Ping YANG
  • Supported by:
    This study was supported by the Major Project of China on New Varieties of GMO Cultivation(2016ZX08010002-003-002);Key Project of Beijing Natural Science Foundation(6151002);National Natural Science Foundation of China (31570268)

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摘要：

玉米株高、开花期、产量、品质等性状与环境中的光密切相关。隐花色素是一类蓝光和近紫外光的受体, 主要参与植物的光形态建成及动、植物的生物钟调控。通过研究玉米隐花色素基因对不同光处理的表达模式, 可为进一步研究其对玉米光形态建成的作用奠定基础。本研究采用RT-PCR技术克隆了玉米ZmCRY1b和ZmCRY2基因; 利用生物信息学相关网站和软件对其编码蛋白的结构域及氨基酸进行了系统发育分析; 利用qRT-PCR分析了玉米自交系B73中ZmCRY1b和ZmCRY2基因在不同组织、以及响应不同光质及长日照和短日照处理的转录丰度。研究发现, 玉米与拟南芥、水稻和小麦的CRY蛋白有相同的结构域及较高的氨基酸序列的一致性, 表明它们具有相似的功能。ZmCRY1b和ZmCRY2基因主要在玉米的叶片中表达; 二者能迅速响应各种持续光质、黑暗到不同光质转换及长日照和短日照处理, 且ZmCRY1b在各种处理下的转录丰度均高于ZmCRY2, 可能暗示ZmCRY1b在玉米中功能更强。以上研究结果表明, ZmCRY1b和ZmCRY2基因均能有效地响应各种光质和光周期处理, 并在玉米的光形态建成中发挥重要作用。本研究为进一步探明ZmCRY1b和ZmCRY2基因的功能及其在玉米品种改良中的应用提供了研究基础。

关键词: 玉米, 隐花色素, 光形态建成, 光处理, 转录丰度

Abstract:

Light is lightly related to the important agronomic traits in maize such as plant height, flowering time, yield and quality. Cryptochromes are blue and ultraviolet-A photoreceptors generally existing in animal, plant and microbial, which mainly regulate photomorphogenesis in plants and circadian rhythms in both of plant and animal. Therefore, the expression pattern analysis of cryptochrome in maize could lay a research foundation in the photomorphogenesis in maize. The ZmCRY1b and ZmCRY2 genes were cloned by RT-PCR. Their proteins’ function domains and the phylogenetic analysis of amino acid sequences were carried out through bioinformatics analysis. The transcription abundances of ZmCRY1b and ZmCRY2 genes in different tissues of inbred line B73 under different light treatments were analyzed by qRT-PCR. We found that the function domains of ZmCRY1b or ZmCRY2 protein was consistent with CRY1 or CRY2 in Arabidopsis, rice and wheat, which contains the PHR and CCE domains or the PHR domain, respectively. Phylogenetic analysis indicated that the three gramineous CRYs from maize, wheat, and rice belonged to the same branch, while showing low similarity to other CRY1 proteins from dicotyledons. ZmCRY1b and ZmCRY2 genes highly expressed in leaf. Meanwhile, they could respond to all treatments of different continuous light conditions, the transitions from the dark to light conditions, as well as long-day and short-day conditions. The transcription abundances of ZmCRY1b in all treatments were higher than those of ZmCRY2, indicating that ZmCRY1b was more important than ZmCRY2 in maize. In conclusion, both of ZmCRY1b and ZmCRY2 genes can greatly respond to different light conditions and light cycle treatments, and play an important role in maize photomorphogenesis. Our results also provide a research basis for functional exploration of ZmCRY1b and ZmCRY2 in crop improvement.

Key words: maize, cryptochrome, photomorphogenesis, light treatment, transcription abundance

表1

基因克隆所用引物"

基因名称
Gene name		 基因编号
Accession number		 正向引物序列
Forward primer sequence (5'-3')		 反向引物序列
Reverse primer sequence (5'-3')
ZmCRY1b ZM02G13620 CACCGCCTGATGAACTGGA ATGGATGAGTAGTTCAGTGGACAA
ZmCRY2 ZM09G09240 TCTGGTTATTGTCATATTGCAGTTCT TGCCAAGATGTTCCCTTTGAGT

表2

qRT-PCR所用引物"

基因名称
Gene name		 基因编号
Accession number		 正向引物序列
Forward primer sequence (5'-3')		 反向引物序列
Reverse primer sequence (5'-3')
ZmCRY1b ZM02G13620 CACCGCCTGATGAACTGGA ATGGATGAGTAGTTCAGTGGACAA
ZmCRY2 ZM09G09240 GAACCACAGGCGAGATGCT GATCACTACAAACGCACCAGC
ZmTubulin NM_001174192 ACTTCATGCTTTCGTCCTACGCTCCA CTGGGAGGCTGGTAGTTGATTC

图1

玉米与拟南芥、小麦和水稻的CRY1蛋白等常见作物的氨基酸序列比对及结构域分析使用NCBI网站和DNAMAN对其进行序列比对; 使用SMART网站对其进行结构域分析。AtCRY1: 拟南芥CRY1, AAB28724; OsCRY1a: 水稻CRY1a, BAB70686; OsCRY1b: 水稻CRY1b, BAB70688; TaCRY1a: 小麦CRY1a, ABX58028; ZmCRY1b: 玉米CRY1b, ZM02G13620。图中黑色、深灰色、浅灰色及白色分别代表一致性为100%、75%、50%和0。"

图2

玉米与拟南芥、小麦、水稻等常见作物的CRY2蛋白的氨基酸序列比对和结构域分析 使用NCBI网站和DNAMAN对其进行序列比对; 使用SMART网站对其进行结构域分析。AtCRY2: 拟南芥CRY2, AT1G04400.2; OsCRY2: 水稻CRY2, CAC82538.1; TaCRY2: 小麦CRY2, ABX58030.1; ZmCRY2: 玉米CRY2, ZM09G09240。图中黑色、深灰色、浅灰色及白色分别代表一致性为100%、75%、50%和0。"

图3

玉米与拟南芥、小麦和水稻等常见作物的CRY蛋白在氨基酸水平的系统发育分析使用NCBI网站获得全长氨基酸系列, 使用DNAMAN对其进行系统发育分析。AtCRY1: 拟南芥, AAB28724; AtCRY2: 拟南芥, AT1G04400.2; BnCRY1: 甘蓝型油菜, CAG28805; BnCRY2a: 甘蓝型油菜, AEA29690.1; BnCRY2b: 甘蓝型油菜油菜, AEA29691.1; GmCRY1a: 大豆, DQ401046; GmCRY1b1: 大豆, AB498929; GmCRY1b2: 大豆, AB498930; GmCRY2: 大豆, XP_006588364.1; OsCRY1a: 水稻, BAB70686; OsCRY1b: 水稻, BAB70688; OsCRY2: 水稻CAC82538.1; HvCRY1a: 大麦, ABB13328; HvCRY1b: 大麦, ABB13331; TaCRY1a: 小麦, ABX58028; TaCRY2: 小麦, ABX58030.1; PsCRY1: 豌豆, AAS79662; SbCRY2: 高粱, AAN37909; SlCRY1a: 番茄, AAD44161; SlCRY1b: 番茄, AAL02092; ZmCRY1a1: 玉米, ZM05G31560; ZmCRY1a2: 玉米, ZM04G17060; ZmCRY1b: 玉米, ZM02G13620; ZmCRY2: 玉米, ZM09G09240。"

图4

ZmCRY1b和ZmCRY2基因在不同器官中的相对表达水平分析分别取于自然条件下生长一定阶段的B73幼苗的不同器官(根、茎、叶、雄花、叶枕、叶鞘、花丝、幼穗、花柄和苞叶)为材料用于qRT-PCR分析。以根中的ZmCRY1b的转录丰度为对照, 将该ZmCRY1b/Tubulin的比值设为1。柱状图显示了在3次独立的生物学重复下ZmCRY1b/Tubulin比值的平均值, 其中, 误差线代表了标准差。用星号表示差异的显著性, * P < 0.05, ** P < 0.01。"

图5

ZmCRY1b和ZmCRY2基因对响应不同光质的相对表达水平分析玉米自交系“B73”的幼苗在黑暗、持续远红光(FR, 0.25 μmol m-2 s-1)、持续红光(R, 22.3 μmol m-2 s-1)、持续蓝光(B, 13 μmol m-2 s-1)或持续白光(W, 17 μmol m-2 s-1)下生长了13 d。以黑暗条件下的ZmCRY2的转录丰度为对照, 并将该ZmCRY2/Tubulin的比值设为1。柱状图代表了在3次独立的生物学重复下ZmCRY2/Tubulin的平均值, 误差线代表了标准差。用星号表示差异的显著性, * P< 0.05, ** P < 0.01。"

图6

ZmCRY1b和ZmCRY2基因由黑暗到不同光质下的相对表达丰度玉米自交系B73的幼苗在黑暗生长13 d后, 分别转入蓝光(B, 13 μmol m-2 s-1)、白光(W, 17 μmol m-2 s-1)、红光(R, 22.3 μmol m-2 s-1)下0 h、0.25 h、0.5 h、1 h、2 h、4 h、8 h、12 h和24 h以及远红光(FR, 0.25 μmol m-2 s-1)下0 h、0.16 h、0.25 h、0.5 h、1 h、2 h、4 h、8 h、12 h、24 h和24.08 h取材, 用于qRT-PCR分析。把黑暗条件下ZmCRY2/Tubulin的比值设为1, 并以此为对照。折线图代表了在3次独立的生物学重复下ZmCRY2/Tubulin的平均值, 其中误差线代表了标准差。"

图7

ZmCRY1b和ZmCRY2基因在光周期(长日照和短日照)处理的表达水平“B73”的幼苗分别在长日照条件下(LD, 16 h光照/8 h黑暗)或短日照条件下(SD, 8 h光照/16 h黑暗)生长13 d后, 每2 h取一次样。把ZmCRY2/Tubulin在黑暗结束时期的比值设为1, 并以此为对照。折线图代表了在3次独立的生物学重复下ZmCRY2/Tubulin的平均值, 其中误差线代表了标准差。"

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