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作物学报 ›› 2012, Vol. 38 ›› Issue (08): 1425-1434.doi: 10.3724/SP.J.1006.2012.01425

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

应用SRAP与ISSR分析烟草种质资源遗传多样性及遗传演化关系

祁建民1,梁景霞2,陈美霞1,3,徐建堂1,牛小平1,周东新4,王涛5,陈顺辉6   

  1. 1福建农林大学作物科学学院作物遗传育种与综合利用省部共建教育部重点实验室,福建福州350002;2山东省济宁市生物化学工业办公室,山东济宁272000;3宁德师范学院生物工程系,福建宁德 352100;4福建省龙岩市烟草科学研究所,福建龙岩364000;5福建南平烟草分公司,福建南平 353000;6福建省烟草科学研究所,福建福州35000
  • 收稿日期:2011-12-15 修回日期:2012-04-16 出版日期:2012-08-12 网络出版日期:2012-05-11
  • 基金资助:

    本研究由中国烟草总公司重点科技项目资助(110201002006)。

Genetic Diversity and Evolutionary Analysis of Tobacco (Nicotiana tabacum L.) Germplasm Resources Based on ISSR and SRAP Markers

QI Jian-Min1,LIANG Jing-Xia2,CHEN Mei-Xia1,3,XU Jian-Tang1,NIU Xiao-Ping1,ZHOU Dong-Xin4,WANG Tao5,CHEN Shun-Hui6   

  1. 1 Key Laboratory of Ministry of Education for Genetics, Breeding and Multiple Utilization of Crops, College of Crop Science of Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian; 2 Biochemistry Industrial Office of Jining, Jining 272000, China; 3 Department of Biological Engineering of Ningde Normal University, Ningde 352100, China; 4 Fujian Longyan Tobacco Science Institute, Longyan 364000, China; 5Nanping Tobacco Branch Company, Nanping 353000, China; 6 Fujian Tobacco Science Institute, Fuzhou 350003, China
  • Received:2011-12-15 Revised:2012-04-16 Published:2012-08-12 Published online:2012-05-11

摘要: 应用ISSR与SRAP两种分子标记,研究国内外96份烟草种质的遗传多样性及不同栽培类型种质的遗传演化关系。表明烟属种间具有丰富的遗传多样性,种间的遗传相似性(GS)在0.28~0.58之间,遗传分化系数(Gst)为0.83。普通栽培种品种间遗传多样性水平较低,品种间的遗传相似性在0.61~0.99之间,栽培种内的遗传多样性为烤烟>晒晾烟>白肋烟>香料烟。当相似系数在0.67作切割线时,基于2种标记的96份烟草种质资源的聚类结果为,(1)普通烟草栽培品种材料91份聚在同一大类,而黄花烟、黏烟草、浅波烟草、哥西氏烟草、香甜烟草5个种也分别为单独的个类,同普通烟草栽培种类群完全区别开来;(2)从进化上看,烤烟和晒晾烟间的遗传进化关系最近,香料烟和黄花烟之间的亲缘关系较远;普通烟草栽培种中国内外来源的烟草品种亲缘关系极其相近,遗传分化现象甚微;(3)2种分子标记虽然原理不同,但分析结果趋势相近(r=0.68,P=1.000)。

关键词: 烟草, SRAP, ISSR, 遗传多样性, 遗传演化

Abstract: In order to explore on the genetic diversity and genetic evolution among cultivated types and wild species in the genus Nicotiana, 96 tobacco accessions from China and abroad were studied with ISSR and SRAP analysis. Both molecular markers revealed high genetic diversity among species of Nicotiana (genetic similarity = 0.28–0.58) and low genetic diversity among 91 cultivated tobacco lines (Genetic Similarity = 0.61–0.99).Genetic differentiation index (GST) among species of Nicotiana was 0.83. The order of genetic diversityindex within different cultivated types was cured tobacco>suncured tobacco>burley tobacco>aromatic tobacco. When the similarity coefficient was 0.67 as the cutting line, the cluster results of 96 tobacco accessions based on SRAP and ISSR were as follows: (1) UPGMA analysis showed that all 91 culture varieties clustered into one group separating from N. rustica, N. glutinosa, N. repanda, N. gossei, N. suaveolens. (2) The cured tobacco has close genetic relationship with suncured tobacco, and aromatic tobacco was far away from N. rustica. There was little genetic differentiation between cultivated tobacco lines from China and those from othercountries. (3) The correlation coefficient between genetic distance matrixes based on ISSR and SRAP was 0.68, indicating that the basic results of the two types of markers are consistent. In conclusion, ISSR and SRAP are efficient in generating more accurate information on genetic background, relationship and evolution of tobacco germplasm. The results of this research would be favorable for further practices in tobacco breeding.

Key words: Tobacco (Nicotiana tabacum L.), Sequence-related amplified polymorphism (SRAP), Inter-simple sequence repeat (ISSR), Genetic diversity, Evolution

[1]Coussirat J C. Genetic diversity and varietal identification in the species Nicotiana tabacum by RAPD markers. Annaesddll Tabacum, 1994, 26: 1–7

[2]Coussirat J C. Genetic diversity and varietal identification in Nicotiana tabacum with RAPD markers. Annales du Tabac Section 2, 1994, 26: 1–7

[3]Xu M-H(许明辉), Zheng M-H(郑民慧), Liu Y-Z(刘彦中). Genetic diversity and identification in varieties of Nicotiana tobacum by RAPD marker. Seed (种子), 1998, (5): 23–25 (in Chinese with English abstract)

[4]Yang Y-C(杨友才), Yu S-H(余硕辉), Yin H-Q(尹晗琪). Studies on genetic diversity of 48 tobacco varieties by RAPD analysis. Subtrop Plant Sci (亚热带植物科学), 2008, 37(3): 10–14 (in Chinese with English abstract)

[5]Guo J-P(郭金平), Zhu H-L(朱惠丽), Zhou Y-F(周以飞), Pan D-R(潘大仁), Chen S-H(陈顺辉), Wu S-X(巫升鑫). Genetic diversity and genetic relationship analysis of some flue-cured tobacco germplasms based on RAPD. Chin Tob Sci (中国烟草科学), 2009, 30: 15–18, 24 (in Chinese with English abstract)

[6]Qi J-M(祁建民), Wang T(王涛), Chen S-H(陈顺辉), Zhou D-X(周东新), Fang P-P(方平平), Tao A-F(陶爱芬), Liang J-X(梁景霞), Wu W-R(吴为人). Genetic diversity and genetic relative analysis of tobacco germplasm based on inter-simple sequence repeat (ISSR). Acta Agron Sin (作物学报), 2006, 32: 373–378 (in Chinese with English abstract)

[7]Xiao B-G(肖炳光), Yang B-C(杨本超). Assessment of genetic diversity among tobacco germplasms by ISSR markers. Sci Agric Sin (中国农业科学), 2007, 40(10): 2153–2161 (in Chinese with English abstract)

[8]Fu B(傅冰), Liu D-Q(刘迪秋), Li W-Z(李文正), Chen L-M(陈丽梅), Li K-Z(李昆志). Genetic diversity analysis of 25 tobacco germplasm resources by ISSR molecular marker. J Anhui Agric Sci (安徽农业科学), 2008, 36(3): 898–901 (in Chinese with English abstract)

[9]Liang J-X(梁景霞), Qi J-M(祁建民), Fang P-P(方平平), Wang T(王涛), Chen S-H(陈顺辉), Zhou D-X(周东新), Tao A-F(陶爱芬), Liang K-J(梁康迳), Wu W-R(吴为人). Genetic diversity and genetic relative analysis of tobacco germplasm based on inter-simple sequence repeat (ISSR). Sci Agric Sin (中国农业科学), 2008, 41(1): 286–294 (in Chinese with English abstract)

[10]Ren N, Timko M P. AFLP analysis of genetic polymorphism and evolutionary relationships among cultivated and wild Nicotiana species. Genome, 2001, 44(4): 559–571

[11]Yang Y-C(杨友才), Zhou Q-M(周清明), Yin H-Q(尹晗琪), Zhu L-S(朱列书). Studies on genetic diversity and relationship in tobacco germplasms by AFLP analysis. Sci Agric Sin (中国农业科学), 2006, 39(11): 2194–2199 (in Chinese with English abstract)

[12]Li F-X(李凤霞), Wang W-F(王卫锋), Wang L(王鲁), Cui M-M(崔萌萌), Sun Y-H(孙玉合). Fluorescent AFLP analysis of genetic diversity and evolutionary relatives of Nicotiana genus. Sci Agric Sin (中国农业科学), 2010, 43(12): 2418–2427 (in Chinese with English abstract)

[13]Liu J-F(刘建丰), Wang Z-D(王志德), Liu Y-H(刘艳华), Mou J-M(牟建民). Application of SRAP on analysis of genetic diversity in tobacco germplasms. Chin Tob Sci (中国烟草科学), 2007, 28(5): 49–53 (in Chinese with English abstract)

[14]Liu Y-H(刘艳华), Wang Z-D(王志德), Mu J-M(牟建民), Liu J-F(刘建丰), Dai P-G(戴培刚). Genetic diversity analysis on different tobacco populations. Chin Tob Sci (中国烟草科学), 2009, 30: 19–24 (in Chinese with English abstract)

[15]Ye L-Q(叶兰钦), Xin M-M(辛明明), Du J-K(杜金昆), Xie C-J(解超杰), Li Y-P(李永平), Zhou Q-M(周清明). Genetic diversity revealed by SSR markers of the tobacco cultivars. Chin Agric Sci Bull (中国农学通报), 2009, 25(1): 56–62 (in Chinese with English abstract)

[16]Liu S-C(刘胜传), Liu R-X(刘仁祥), Lei H-M(雷红梅), Chen C-Y(陈春艳). Genetic diversity of some tobacco germplasms by using SSR technique. Guizhou Agric Sci (贵州农业科学), 2009, 37(7): 1–3 (in Chinese with English abstract)

[17]Yang Y-C(杨友才), Zhou Q-M(周清明), Yin H-Q(尹晗琪). Analysis of genetic diversity in tobacco germplasm by RAPDs and AFLPs. J Agric Biotechnol (农业生物技术学报), 2006, 14(4): 585–593 (in Chinese with English abstract)

[18]Tao A-F(陶爱芬), Liu Z-H(刘中华), Qi J-M(祁建民), Zhou D-X(周东新), Wang T(王涛), Chen S-H(陈顺辉). Comparison and analysis of IRAP and ISSR molecular methods used for assessment of genetic diversity in tobacco. J Wuhan Bot Res (武汉植物学研究), 2009, 27(6): 589–594 (in Chinese with English abstract)

[19]Nie Q(聂琼), Liu R-X(刘仁祥). Genetic diversity of 23tobacco germplasm resources by SSR and ISSR analyze. Southwest China J Agric Sci (西南农业学报), 24(1): 15–19 (in Chinese with English abstract)

[20]Liang J-X(梁景霞), Qi J-M(祁建民), Wu W-R(吴为人), Zhou D-X(周东新), Chen S-H(陈顺辉), Wang T(王涛), Tao A-F(陶爱芬). DNA extraction and establishment of SRAP reaction system in tobacco. Acta Tab Sin (中国烟草学报), 2005, 11: 33–38 (in Chinese with English abstract)

[21]Nei M, Li W H. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA, 1979, 76: 5269–5273

[22]Miller M P. Tools for Population Genetic Analysis (TFPGA), version 1.3. Northern Arizona University, Flagstaff, 1997

[23]Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res, 1967, 27: 209–220

[24]Yeh F C, Yang R C, Boyle T, Ye Z H, Mao J. XPOPGENE, the user friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada, 1997

[25]Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA, 1973, 70: 3321–3323

[26]Nei M. Genetic distance between populations. Am Nat, 1972, 106: 283–292

[27]Zietkiewicz E, Rafalski A, Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics, 1994, 20: 176–183

[28]Li G, Quiros C F. Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet, 2001, 103: 455–461

[29]Wang Y-Y(王元英), Zhou J(周健). Main tobacco assortment blood reasons of China and the United States analysis and tobacco breeding. Acta Tab Sin (中国烟草学报), 1995, (2): 11–22 (in Chinese with English abstract)

[30]Bogani P, Lio P, Intrieri M C, Buiatti M A. physiological and molecular analysis of the genus Nicotiana. Mol Phylogenet Evol, 1997, 7: 62–70

[31]Ren N, Timko M P. AFLP analysis of genetic polymorphism and evolutionary relationships among cultivated and wild Nicotiana species. Genome, 2001, 44: 559–571
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