欢迎访问作物学报,今天是

作物学报 ›› 2015, Vol. 41 ›› Issue (03): 367-377.doi: 10.3724/SP.J.1006.2015.00367

• 作物遗传育种·种质资源·分子遗传学 • 上一篇    下一篇

利用SRAP、ISSR、SSR标记绘制黄麻基因源分子指纹图谱

巫桂芬1,2,徐鲜均3,徐建堂1,陶爱芬1,张立武1,魏丽真4,潘漠5,方平平1,林荔辉1,祁建民1,*   

  1. 1 福建农林大学 / 作物遗传育种与综合利用教育部重点实验室 / 福建省作物设计育种重点实验室 /福建省南方特色经济作物遗传育种与多用途综合利用国际合作基地,福建福州350002;2 广西农业科学院园艺研究所,广西南宁530007;3 武夷山生物资源研究所,福建武夷山 3543004;4 福州市第三中学,福建福州 350002;5 福州天地同人信息科技有限公司,福建福州350001
  • 收稿日期:2014-09-14 修回日期:2014-12-19 出版日期:2015-03-12 网络出版日期:2015-01-12
  • 通讯作者: 祁建民, E-mail: qijm863@163.com, Tel: 0591-87644898
  • 基金资助:

    本研究由国家现代农业产业技术体系建设专项(CARS-19-E06),引进国际先进农业科学技术计划(948计划)项目(2013-Z7)和国家科技支撑计划项目(2013BAD01B03-13)资助。

Construction of Molecular Fingerprinting Map in Gene Pool of Jute with SRAP, ISSR and SSR Markers

WU Gui-Fen1,2,XU Xian-Jun3,XU Jian-Tang1,TAO Ai-Fen1,ZHANG Li-Wu1,WEI Li-Zhen4,PAN Mo5,FANG Ping-Ping1,LIN Li-Hui1,QI Jian-Min1,*   

  1. 1 Key Laboratory of Ministry for Genetics, Breeding and Multiple Utilization of Crops, Fujian Agriculture and Forestry University, Fujian Provincial Key Laboratory of Crop Breeding by Design, Fujian Province International Cooperation Base for Genetics, Breeding and Multiple Utilization of Characteristic Economy Crops in South China , Fuzhou 350002, China; 2 Horticultural Research Institute, Guangxi Academy of Agricultural Sciences, Nanning 530007, China; 3 Wuyishan Biological Resource Institute of Fujian Province, Fuzhou 354300, China; 4 Third Middle School of Fuzhou, Fuzhou 350002, China; 5 Fuzhou Tanditongren Mdt InfoTech Ltd, Fuzhou 350001, China
  • Received:2014-09-14 Revised:2014-12-19 Published:2015-03-12 Published online:2015-01-12
  • Contact: 祁建民, E-mail: qijm863@163.com, Tel: 0591-87644898

摘要:

以国内外引进保存的231份黄麻种质资源为材料,分别采用SRAP、ISSR、SSR分子标记和编程DNA指纹图谱分析软件,绘制黄麻遗传资源基因组DNA指纹图谱。结果表明,通过筛选出的35对SRAP引物对231份黄麻品种进行标记分析,获得96份黄麻品种DNA指纹图谱;11个ISSR多态性引物对96份材料进行DNA标记分析,获得45份黄麻品种DNA指纹图谱;49对SSR多态性引物对48份黄麻品种进行DNA标记分析,获得13份黄麻品种DNA指纹图谱,累计完成了154份黄麻品种基因组DNA分子指纹图谱绘制。每一个被识别的品种都具有其独特的分子“身份证”。其他77份地方品种因与部分品种遗传相似性过高,未能被识别,表明黄麻地方品种存在较为严重的同种异名现象。

关键词: 黄麻, 遗传资源, 分子标记, DNA指纹图谱

Abstract:

An experiment was conducted using 231 jute germplasm resources from abroad and at home to construct DNA fingerprints of jute varieties with SRAP, ISSR, SSR marker and the DNA fingerprint analysis software. The results showed that 96 DNA fingerprints from 231 jute germplasm resources with 35 pairs of selected SRAP primers, 45 DNA fingerprints from 96 jute varieties with 11 selected polymorphic ISSR primers, and 13 DNA fingerprints from 48 jute varieties with 49 selected polymorphic SSR primers were constructed. This study completed a total of 154 genomic DNA molecular fingerprint maps of jute varieties. Every identified jute variety had its unique “ID”. Other 77 local varieties had not been able to be identified due to their high genetic similarity with some varieties. It showed that jute local variety has a serious phenomenon of synonym.

Key words: Jute, Genetic resources, Molecular markers, DNA fingerprint

[1]李宗道. 麻类的理论与技术. 上海: 上海科学技术出版社, 1980. pp 388–389



Li Z D. Theory and Technology of Hemp. Shanghai: Shanghai Scientific and Technical Publishers, 1980. pp 388–389 (in Chinese)



[2]祁建民, 李维明, 吴为人. 黄麻的起源与进化研究. 作物学报, 1997, 23: 677–682



Qi J M, Li W M, Wu W R. Origin and evolution of jute. Acta Agron Sin, 1997, 23: 677–682 (in Chinese)



[3]李爱青. 肯尼亚黄麻红麻种质资源的考察报告. 中国麻作, 1990, 1: 16–20



Li A Q. The visiting report of jute and kenaf germplasms in Kenya. China’s Fiber Crops, 1990, 12(1): 16–21 (in Chinese)



[4]徐静, 董化玲. 黄麻服饰用纺织产品开发及前景. 纺织科技进展. 科学通报, 2005, 50: 904–911



Xu J, Dong H L. Textile product development and foregrounds for jute dress: textile science and technology progress. Sci Bull, 2005, 50: 904–911



[5]黎宇, 程新奇, 郭安平. 我国黄麻种质资源的研究进展概述. 中国麻作, 1998, 20(3): 38–41



Li Y, Chong X Q, Guo A P. Summary of the progress of jute germplasm resources in China. China’s Fiber Crops, 1998, 20(3): 38–41 (in Chinese)



[6]Smartt J, Gregory W C, Gregory M P. The genomes of Arachis hypogaea: cytogenetiestudies of putative genome donors. Euphytiea, 1978, 27: 665–675



[7]程新奇, 郭安平, 肖瑞芝, 孙家曾. 黄麻种质资源的鉴定与利用分析. 中国麻作, 1993, (4): 1–8



Cheng X Q, Guo A P, Xiao R Z, Sun J Z. identification and utilization analysis of Jute germplasm resources. China’s Fiber Crops, 1993, (4): 1–8 (in Chinese)



[8]Latif M A, Rafii Yusop M, Motiur Rahman M. Microsatellite and minisatellite markers based DNA fingerprinting and genetic diversity of blast and ufra resistant genotypes. Comptes Rendus Biol, 2011, 334: 282–289



[9]Chuang H Y, Huu-Shen L U R, Kae-Kang H W U, Chang M C. Authentication of domestic Taiwan rice varieties based on fingerprinting analysis of microsatellite DNA markers. Bot Studies, 2011, 52(4): 31–40



[10]Ashkenazi V, Chani E, Lavi U. Development of microsatellite markers in potato and their use in phylogenetic and fingerprinting analyses. Genome, 2001, 44: 50–62



[11]Ercisli S, Ipek A, Barut E. SSR marker-based DNA fingerprinting and cultivar identification of olives (Olea europaea). Biocheml Genet, 2011, 49: 555–561



[12]Yu H F, Wang J S, Zhao Z Q, Sheng X G, Gu H H. DNA fingerprinting and genetic purity testing of a new broccoli hybrid using SSR markers. Seed Sci Technol, 2013, 41: 464–468



[13]Rodriguez M J B. Microsatellite DNA fingerprinting technology for coconut and oil palm. Philippine J Crop Sci, 2011, 10: 88–95



[14]Onasanya A, Basso A, Somado E A, Gasore E.R, Nwilene F E, Nwilene F E, Ingelbrecht I L, Lamo J, Wydra K, Ekperigin M M, Langa M, Oyelakin O, Oyelakin O, Sere Y, Winter S, Onasanya R O. Development of a combined molecular diagnostic and DNA fingerprinting technique for rice bacteria pathogens in Africa. Biotechnology, 2010, 9: 89–105



[15]Case C, Kandola K, Chui L, Li V, Nix N, Johnson R. Examining DNA fingerprinting as an epidemiology tool in the tuberculosis program in the Northwest Territories, Canada. Intl J Circumpolar Health, 2013, 9(3): 72



[16]Tyler K D, Wang G, Tyler S D, Johnson W M. Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens. J Clinical Microbiol, 1997, 35: 339



[17]Cantini C, Iezzoni A F, Lamboy W F, Boritzki M, Struss D. DNA fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J Am Soc Hort Sci, 2001, 126: 205–209



[18]Wünsch A, Hormaza J I. Cultivar identification and genetic fingerprinting of temperate fruit tree species using DNA markers. Euphytica, 2002, 125: 59–67



[19]Paglia G, Morgante M. PCR-based multiplex DNA fingerprinting techniques for the analysis of conifer genomes. Mol Breed, 1998, 4: 173–177



[20]Vaneechoutte M. DNA fingerprinting techniques for microorganisms. Mol Biotechnol, 1996, 6: 115–142



[21]Partis L, Croan D, Guo Z, Coldham C T, Murby J. Evaluation of a DNA fingerprinting method for determining the species origin of meats. Meat Sci, 2000, 54: 369–376



[22]Prevost A, Wilkinson M J. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genet, 1999, 98: 107–112



[23]Bonito G, Isikhuemhen O S, Vilgalys R. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresource Technol, 2010, 101: 1021–1027



[24]徐建堂, 祁建民, 方平平, 李爱青, 林荔辉, 吴建梅, 陶爱芬. CTAB法提取红麻总DNA技术优化与ISSR和SRAP扩增效果. 中国麻业科学, 2007, 29(4): 179–183



Xu J T, Qi J M, Fang P P, Li A Q, Lin L H, Wu J M, Tao A F. Optimized CTAB protocol for extracting genomic DNA from kenaf and improved PCR amplifications of ISSR and SRAP. Plant Fiber Sci China, 2007, 29(4): 179–183 (in Chinese with English abstract)



[25]Zhang G Q, QI J M, Zhang X C, Fang P P, Su J G, Tao A F, Lan T, Wu W R, Liu A M. A genetic linkage map of kenaf (Hibiscus cannabinus L.) based on SRAP, ISSR and RAPD markers. Agric Sci China, 2011, 10: 1346–1353

[1] 翟胜男, 曹新有, 李豪圣, 李吉虎, 李法计, 刘金栋, 夏先春, 吕莹莹, 马瑞峰, 王颖, 耿洪伟, 刘建军. 小麦Pod-A1、Pod-D1和Pod-2D位点等位变异对籽粒过氧化物酶活性的遗传效应分析[J]. 作物学报, 2026, 52(6): 1593-1603.
[2] 彭佳泺, 李颖, 李丹丹, 杨军宁, 郭学峰, 张文姣, 俞晓雪, 周亚荣, 王振玉, 王彩香, 马雄风, 宿俊吉. 陆地棉I类LBD家族成员鉴定及GhLBD6调控开花期的功能和单倍型分析[J]. 作物学报, 2026, 52(6): 1682-1697.
[3] 张献丰, 郭利建, 李康春, 孔斌雪, 刘玉芳, 车卓, 杨德龙. 小麦ABHD6基因家族鉴定与粒重功能标记开发[J]. 作物学报, 2026, 52(6): 1711-1727.
[4] 王楚锐, 李开祥, 赵志, 肖麓, 唐国永, 赵志刚, 徐亮, 杜德志, 柳海东. 甘蓝型春油菜早花基因BnCRY2功能位点KASP标记的开发及应用[J]. 作物学报, 2026, 52(3): 708-721.
[5] 王粤生, 葛冬冬, 程兰斐, 陈春环, 王长有, 刘新伦, 李停栋, 邓平川, 吉万全, 赵继新. 小麦-华山新麦草二体异代换系16DH25-7的分子细胞遗传学及抗病性鉴定[J]. 作物学报, 2026, 52(2): 433-445.
[6] 黄梦欣, 庄灵玲, 程佩佩, 李秦, 徐建堂, 陶爱芬, 方平平, 祁建民, 张立武. 黄麻U6启动子克隆及其转录活性分析[J]. 作物学报, 2025, 51(5): 1156-1165.
[7] 展宗冰, 靳奇峰, 刘迪, 吕迎春, 郭莹, 张雪婷, 虎梦霞, 王尚, 杨芳萍. 甘肃省小麦农家种老芒麦分子鉴定及其重要性状评价[J]. 作物学报, 2025, 51(3): 609-620.
[8] 徐晓伟, 冯晶, 王凤涛, 童朝阳, 张建周, 李春盈, 蔺瑞明. 小麦地方品种蚕老麦成株抗条锈病QTL定位[J]. 作物学报, 2025, 51(11): 2933-2943.
[9] 田汉钊, 冯龙婷, 应开, 孟天琪, 武军, 刘玉秀. 外引小麦种质麦谷蛋白亚基组成及评价[J]. 作物学报, 2025, 51(10): 2663-2680.
[10] 刘鑫源, 程宇坤, 王丽丽, 战帅帅, 马孟瑶, 郭玲, 耿洪伟. 新疆小麦过氧化物酶活性基因TaPod-A1、TaPod-A3和TaPod-D1等位变异及分布规律[J]. 作物学报, 2025, 51(1): 68-78.
[11] 艾莎, 李莎, 方治伟, 李论, 李甜甜, 高利芬, 陈利红, 肖华锋, 万人静, 闫多子, 武星廷, 彭海, 韩瑞玺, 周俊飞. 棉花MNP标记位点开发及其在DNA指纹图谱构建中的应用[J]. 作物学报, 2024, 50(9): 2267-2278.
[12] 裴法敬, 张文轩, 张晓, 王昕钰, 彭少兵, 米甲明. 长粒香型的超短生育期水稻新品系创制[J]. 作物学报, 2024, 50(7): 1684-1698.
[13] 范子培, 李龙, 史雨刚, 孙黛珍, 李超男, 景蕊莲. 小麦TabHLH112-2B基因克隆及每穗小穗数相关功能标记开发[J]. 作物学报, 2024, 50(2): 403-413.
[14] 柯会锋, 苏红梅, 孙正文, 谷淇深, 杨君, 王国宁, 徐东永, 王洪这, 吴立强, 张艳, 张桂寅, 马峙英, 王省芬. 棉花现代品种资源产量与纤维品质性状鉴定及分子标记评价[J]. 作物学报, 2024, 50(2): 280-293.
[15] 陈天, 李昱樱, 荣二花, 吴玉香. 棉属人工异源四倍体后代性状鉴定及花器转录组学分析[J]. 作物学报, 2024, 50(2): 325-339.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!