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Preliminary study on the regulation of organ size and Sclerotinia sclerotiorum resistance by BnKIX8 in rapeseed (Brassica napus L.)

Luo Li-Ya,Ma Wu-Hui,Yang Long,Zhu Pei,Li Yan,Xu Ben-Bo,Zhang Xue-Kun,Xu Jin-Song*   

  1. College of Agronomy, Yangtze University / Key Laboratory of Green and Efficient Crop Production in the Middle Reaches of Yangtze River, Ministry of Agriculture and Rural Affairs / Hubei Key Laboratory of Waterlogging Disaster and Agricultural Use of Wetland, Jingzhou 434025, Hubei, China
  • Received:2026-03-02 Revised:2026-07-15 Accepted:2026-07-15 Published:2026-07-23
  • Supported by:
    This study was supported by the Major Projects of Agricultural Biology Breeding of China (2023ZD04042).

Abstract: In crop production, high-yield potential and disease resistance are often difficult to synergistically improve. Exploring the functions and molecular mechanisms of BnKIX8 homologous copies in the growth, development, and Sclerotinia sclerotiorum resistance of Brassica napus is therefore of great significance for the coordinated improvement of single-plant yield and disease resistance. In this study, Arabidopsis thaliana AtKIX8 was used as the reference gene to identify BnKIX8 homologous copies in B. napus, and their expression patterns were analyzed. CRISPR-Cas9 technology was used to generate loss-of-function mutants of BnKIX8s. Their functions were clarified by comparing agronomic traits and S. sclerotiorum resistance between homozygous mutants and wild-type plants, and the underlying molecular mechanisms were preliminarily explored through transcriptome analysis. The results were as follows: (1) Four homologous copies of BnKIX8 were identified in B. napus. BnKIX8.A7 and BnKIX8.C7 were expressed at all 18 sampling points, with high expression levels in siliques and seeds, whereas no expression of BnKIX8.A1 or BnKIX8.C1 was detected. (2) Homozygous T-DNA-free single mutants, bnkix8.a7 and bnkix8.c7, and the double mutant bnkix8.a7bnkix8.c7 were successfully obtained through CRISPR-Cas9-mediated gene editing. Phenotypic analysis showed that, compared with the wild type, the bnkix8s mutants had significantly increased flower size, silique length, seed size, and 1000-seed weight, as well as significantly higher seed germination and vigor indices. The double mutant showed an additive phenotype, indicating functional redundancy between BnKIX8.A7 and BnKIX8.C7 in regulating rapeseed growth and development. (3) Evaluation of S. sclerotiorum resistance showed that, at 36 and 48 h post-inoculation, lesion areas in the bnkix8s mutants were significantly larger than those in the wild type, suggesting that BnKIX8.A7 and BnKIX8.C7 positively regulate resistance to S. sclerotiorum. (4) KEGG enrichment analysis of transcriptome data indicated that, under normal growth conditions, BnKIX8.A7 and BnKIX8.C7 may contribute to the growth–defense balance by influencing IAA and JA signal transduction pathways. At 24 h post-inoculation with S. sclerotiorum, BnKIX8.A7 and BnKIX8.C7 may participate in the resistance response by affecting α-linolenic acid metabolism and thiamine metabolism pathways. This study provides candidate pathways and genetic resources for further elucidating the functions of BnKIX8s and offers a theoretical basis for breeding high-yield and disease-resistant rapeseed varieties.

Key words: Brassica napus, BnKIX8, CRISPR-Cas9, Sclerotinia sclerotiorum, transcriptome

[1] 刘成, 冯中朝, 肖唐华, 等. 我国油菜产业发展现状、潜力及对策. 中国油料作物学报, 2019, 41: 485–489.
Liu C, Feng Z C, Xiao T H, et al. Development, potential and adaptation of Chinese rapeseed industry. Chin J Oil Crop Sci, 2019, 41: 485–489 (in Chinese with English abstract).

[2] Shi J Q, Li R Y, Qiu D, et al. Unraveling the complex trait of crop yield with quantitative trait loci mapping in Brassica napus. Genetics, 2009, 182: 851–861.

[3] Moles A T, Westoby M. Seedling survival and seed size: a synthesis of the literature. J Ecol, 2004, 92: 372–383.

[4] 曹维, 赵静, 禹艳坤, 等. 调控植物种子大小的分子机制综述. 江苏农业科学, 2020, 48(6): 1–7.
Cao W, Zhao J, Yu Y K, et al. Molecular mechanisms of regulating plant seed size: a review. Jiangsu Agric Sci, 2020, 48(6): 1–7 (in Chinese with English abstract).

[5] Li N, Xu R, Li Y H. Molecular networks of seed size control in plants. Annu Rev Plant Biol, 2019, 70: 435–463.

[6] Thakur J K, Yadav A, Yadav G. Molecular recognition by the KIX domain and its role in gene regulation. Nucleic Acids Res, 2014, 42: 2112–2125.

[7] White D W R. PEAPOD regulates Lamina size and curvature in Arabidopsis. Proc Natl Acad Sci U S A, 2006, 103: 13238–13243.

[8] Gonzalez N, Pauwels L, Baekelandt A, et al. A repressor protein complex regulates leaf growth in Arabidopsis. Plant Cell, 2015, 27: 2273–2287.

[9] Baekelandt A, Pauwels L, Wang Z B, et al. Arabidopsis leaf flatness is regulated by PPD2 and NINJA through repression of CYCLIN D3 genes. Plant Physiol, 2018, 178: 217–232.

[10] Liu Z P, Li N, Zhang Y Y, et al. Transcriptional repression of GIF1 by the KIX-PPD-MYC repressor complex controls seed size in Arabidopsis. Nat Commun, 2020, 11: 1846.

[11] Swinnen G, Mauxion J P, Baekelandt A, et al. SlKIX8 and SlKIX9 are negative regulators of leaf and fruit growth in tomato. Plant Physiol, 2022, 188: 382–396.

[12] Mao Y W, Zhou S L, Yang J, et al. The MIO1-MtKIX8 module regulates the organ size in Medicago truncatula. Physiol Plant, 2023, 175: e14046.

[13] Nguyen C X, Paddock K J, Zhang Z Y, et al. GmKIX8-1 regulates organ size in soybean and is the causative gene for the major seed weight QTL qSw17-1. New Phytol, 2021, 229: 920–934.

[14] Li X, Liu W, Zhuang L L, et al. BIGGER ORGANS and ELEPHANT EAR-LIKE LEAF1 control organ size and floral organ internal asymmetry in pea. J Exp Bot, 2019, 70: 179–191.

[15] Huot B, Yao J, Montgomery B L, et al. Growth-defense tradeoffs in plants: a balancing act to optimize fitness. Mol Plant, 2014, 7: 1267–1287.

[16] He Z H, Webster S, He S Y. Growth-defense trade-offs in plants. Curr Biol, 2022, 32: R634–R639.

[17] Wei L J, Jian H J, Lu K, et al. Genome-wide association analysis and differential expression analysis of resistance to Sclerotinia stem rot in Brassica napus. Plant Biotechnol J, 2016, 14: 1368–1380.

[18] Yan L H, Wei S W, Wu Y R, et al. High-efficiency genome editing in Arabidopsis using YAO promoter-driven CRISPR/Cas9 system. Mol Plant, 2015, 8: 1820–1823.

[19] 中华人民共和国国家市场监督管理总局, 中国国家标准化管理委员会. 农作物种子检验规程 第4部分: 播种质量 发芽试验: GB/T 3543.4-2025. 北京: 中国标准出版社, 2025.
State Administration of the People’s Republic of China for Market Regulation, Standardization Administration of the People’s Republic of China. Rules for agricultural seed testing: Part 4: Sowing Quality–Germination Test: GB/T 3543.4-2025. Beijing: Standards Press of China, 2025 (in Chinese).

[20] 何烈干, 宋来强, 汤洁, 等. 油菜菌核病抗性鉴定方法比较及抗病种质资源的筛选. 江苏农业科学, 2018, 46(18): 90–93.
He L G, Song L Q, Tang J, et al. Comparison of identification methods for resistance to Sclerotinia sclerotiorum and screening of resistant materials of rapeseed. Jiangsu Agric Sci, 2018, 46(18): 90–93 (in Chinese with English abstract).

[21] 黎家, 李传友. 新中国成立70年来植物激素研究进展. 中国科学(生命科学), 2019, 49: 1227–1281.
Li J, Li C Y. Seventy-year major research progress in plant hormones by Chinese scholars. Sci China Ser C, 2019, 49: 1227–1281 (in Chinese with English abstract).

[22] Waadt R, Seller C A, Hsu P K, et al. Plant hormone regulation of abiotic stress responses. Nat Rev Mol Cell Biol, 2022, 23: 680–694.

[23] Major I T, Yoshida Y, Campos M L, et al. Regulation of growth–defense balance by the JASMONATE ZIM-DOMAIN (JAZ)-MYC transcriptional module. New Phytol, 2017, 215: 1533–1547.

[24] Fernández-Calvo P, Chini A, Fernández-Barbero G, et al. The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets of JAZ repressors and act additively with MYC2 in the activation of jasmonate responses. Plant Cell, 2011, 23: 701–715.

[25] Thines B, Katsir L, Melotto M, et al. JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling. Nature, 2007, 448: 661–665.

[26] Wasternack C, Song S S. Jasmonates: biosynthesis, metabolism, and signaling by proteins activating and repressing transcription. J Exp Bot, 2017, 68: 1303–1321.

[27] Goyer A. Thiamine in plants: aspects of its metabolism and functions. Phytochemistry, 2010, 71: 1615–1624.

[28] Julliard J H, Douce R. Biosynthesis of the thiazole moiety of thiamin (vitamin B1) in higher plant chloroplasts. Proc Natl Acad Sci USA, 1991, 88: 2042–2045.

[29] Ahn I P, Kim S, Lee Y H, et al. Vitamin B1-induced priming is dependent on hydrogen peroxide and the NPR1 gene in Arabidopsis. Plant Physiol, 2007, 143: 838–848.

[30] 何晓玲, 刘鹏程, 马伯军, 等. 基于CRISPR/Cas9的基因编辑技术研究进展及其在植物中的应用. 植物学报, 2022, 57: 508–531.
He X L, Liu P C, Ma B J, et al. Advance in gene-editing technology based on CRISPR/Cas9 and its application in plants. Bull Bot, 2022, 57: 508–531 (in Chinese with English abstract).

[31] 许磊, 何菡子, 范楚川. 基于CRISPR/Cas9的基因编辑及其在甘蓝型油菜中的应用. 华中农业大学学报, 2024, 43(5): 51–64.
Xu L, He H Z, Fan C C. CRISPR/Cas9 based gene editing and its application in Brassica napus L. J Huazhong Agric Univ, 2024, 43(5): 51–64 (in Chinese with English abstract).

[32] Du M M, Spalding E P, Gray W M. Rapid auxin-mediated cell expansion. Annu Rev Plant Biol, 2020, 71: 379–402.

[33] Browse J. Jasmonate passes muster: a receptor and targets for the defense hormone. Annu Rev Plant Biol, 2009, 60: 183–205.

[34] Sood M. Jasmonates: “the master switch” for regulation of developmental and stress responses in plants. J Plant Growth Regul, 2023, 42: 5247–5265.

[35] Roychowdhury R, Hada A, Biswas S, et al. Jasmonic acid (JA) in plant immune response: unravelling complex molecular mechanisms and networking of defence signalling against pathogens. J Plant Growth Regul, 2025, 44: 89–114.

[36] Sun S H, Han X Y, Zhang Y Y, et al. Exogenous thiamine regulates multiple plant immunity-associated pathways to inhibit MCMV infection. J Agric Food Chem, 2025, 73: 14353–14362.

[37] Feng M, Liu Y, Zhao Y, et al. Genome-wide analysis of the thiamine biosynthesis gene families in common bean reveals their crucial roles conferring resistance to Fusarium Wilt. Biology, 2025, 14: 1366

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