作物学报 ›› 2018, Vol. 44 ›› Issue (05): 686-696.doi: 10.3724/SP.J.1006.2018.00686
赵庆英1,**, 张瑞娟2,**, 王瑞良2, 高建华2,3, 韩渊怀3,4, 杨致荣1,3,4,*(), 王兴春2,3,4,*()
Qing-Ying ZHAO1,**, Rui-Juan ZHANG2,**, Rui-Liang WANG2, Jian-Hua GAO2,3, Yuan-Huai HAN3,4, Zhi-Rong YANG1,3,4,*(), Xing-Chun WANG2,3,4,*()
摘要:
小米因其营养丰富日益受到重视, 而小米的品质是民众选择小米时最为关注的指标。晋谷21米质优异, 但由于缺少基因组信息, 严重阻碍了其优异米质形成机制的研究。本研究利用高通量测序技术, 对晋谷21全基因组进行重测序, 获得了14.95 Gb高质量测序数据。进一步将其与豫谷1号参考基因组比较, 发掘了169 037个InDel位点和1 167 555个SNP位点, 其中长度在13~50 bp之间适于琼脂糖凝胶电泳检测的InDel位点为14 578个。选择其中1个SNP位点和68个InDel位点验证, 表明利用二代测序技术开发的InDel和SNP标记真实可靠。基于名优谷子晋谷21重测序数据开发的InDel和SNP分子标记具有通用性, 可用于其他谷子、狗尾草和谷莠子等种质资源的相关研究。同时, 开发了一个晋谷21特异的InDel标记2G5501976, 利用该标记即可快速鉴定待测材料是否为晋谷21及其衍生品种。本研究初步揭示了晋谷21的基因组特征, 不仅为深入解析其优异米质形成的分子机制奠定了基础, 而且为相关分子标记辅助育种、遗传分析和基因克隆提供了分子标记资源。
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