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Acta Agron Sin ›› 2012, Vol. 38 ›› Issue (07): 1240-1246.doi: 10.3724/SP.J.1006.2012.01240

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles     Next Articles

QTL Analysis of Rice Ratooning Ability and Related Agronomic Traits by Using RIL Populations

YANG Chuan-Hang1,2,WANG Yu-Ping1,TU Bin1,LI Ting1,HU Liang2,LI Shi-Gui1,*   

  1. 1 Rice Research Institute, Sichuan Agricultural University, Wenjiang 611130, China; 2 Zigong Agricultural Research Institute, Zigong 643000, China
  • Received:2011-11-01 Revised:2012-02-22 Online:2012-07-12 Published:2012-03-29
  • Contact: 李仕贵, E-mail: lishigui@sicau.edu.cn

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Abstract: A molecular linkage map containing 105 SSR marks were constructed by using a RIL population generated from the F7 descent of a cross of japonica glutinous rice variety 89-1 and an indica heavy panicle backbone hybrid rice lines SH527. By using this map, we mapped 15 QTLs for seven agronomic traits in the normal season, which was distributed on chromosomes 1, 2, 3, 5, 6, 7, and 10, respectively. The LOD value varied from 2.10 to 7.51, and the contribution rate varied from 3.77% to 25.37%, among which seven QTLs had the contribution rate larger than 10.0%. The number of a single trait QTL varied from 1 to 5. Two QTLs (qRa4, qRa5) affecting rice ratooning ability were detected on chromosomes 4 and 5, the contribution rate was 8.17% and 7.09%, and the additive effect was 0.32 and -0.39, respectively. Thirty-six QTLs for agronomic traits were detected in two seasons and among which eight were detected repeatablely. According to the results, the ratooning ability was remarkably negatively related to the effective ear of the normal season. In addition, the ratooning ability was tightly positively related to the effective ear in the ratooning season, and was negatively related to the grain number per ear and seed density. The QTLs mapping results revealed that the effective ear of normal season and ratooning season is the main factor that affects rice’s ratooning ability.

Key words: Rice, RIL, Ratooning ability, Agronomic traits, QTL

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