Welcome to Acta Agronomica Sinica,

Acta Agron Sin ›› 2012, Vol. 38 ›› Issue (04): 596-605.doi: 10.3724/SP.J.1006.2012.00596

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles     Next Articles

DNA Fingerprinting of Sesame (Sesamum indicum L.) Varieties (Lines) from Recent National Regional Trials in China

LIU Hong-Yan,WU Kun,YANG Min-Min,ZUO Yang,ZHAO Ying-Zhong*   

  1. Key Laboratory of Oil Crops Biology and genetic breeding of the Ministry of Agriculture, Oil Crops Research Institute of Chinese Academy of Agricultural Science, Wuhan 430062, China
  • Received:2011-08-17 Revised:2011-12-19 Online:2012-04-12 Published:2012-02-13
  • Contact: 赵应忠, E-mail: yingzhzh@public.wh.hb.cn

Abstract: DNA fingerprinting is an important technique for plant variety identification and protection. In this study, 43 sesame (Sesamum indicum L.) varieties (lines) from recent National Regional Trail were amplificated with 12 pairs of SSR primers, and a total of 30 polymorphic bands were obtained. These molecular markers were further used for variety (lines) distinction and uniformity analysis. Clustering analysis showed that 43 varieties (lines) were completely differed from each other with 30 markers. Varieties (lines) from the same breeding institute tended to share a higher genetic similarity, while varieties (lines) with different origins seemed to be more distinct. With a genetic similarity coefficient threshold of 0.90, 90% of varieties (lines) were distinctive, and 80% of tested varieties (lines) were classified into high uniformity group in consistence with marker loci uniformity, Furthermore, in assignment test, 86% of derivative individuals were correctly corresponding to their original varieties (lines), it indicated that most varieties (lines) have a good uniformity. Overall, the results showed that most of the tested sesame varieties (lines) have good distinction and uniformity, and SSR marker is suitable for variety identification and protection.

Key words: Sesame variety, SSR, Distinctness, Uniformity

[1]Ashri A. Sesame breeding. Plant Breed Rev, 1998, 16: 179–228

[2]Sun J(孙建), Zhang X-R(张秀荣), Zhang Y-X(张艳欣), Che Z(车卓), Huang B(黄波). Analysis on genetic diversity and genetic basis of main sesame cultivars released in China. Sci Agric Sin (中国农业科学), 2009, 42(10): 3421–3431 (in Chinese with English abstract)

[3]Ma S-W(马双武). Research and application progress of seedling marker character in crop breeding and seed purity identification in China. J Plant Genet Resour (植物遗传资源学报), 2011, 12( 2): 297–300 (in Chinese with English abstract)

[4]Mei D-S(梅德圣), Li Y-C(李云昌), Chen Y-F(陈玉峰), Li Y-D(李英德), Xu Y-S(徐育松), Hu Q(胡琼). Seed purity identification of Zhongyouza 12 by peroxidase isozyme and SSR markers in Brassica napus. Chin J Agric Biotechnol (农业生物技术学报), 2010, 18(4): 815–821 (in Chinese with English abstract)

[5]Fang Y-C(方玉春), Zhang X-H(张兴和), Feng D-J(冯德举), Liu J-P(刘俊平), Zhuang B-C(庄炳昌), Liang X-K(梁晓葵). The identification of corn seed purity by using PAGE patterns of salt soluble protein. J Jilin Agric Univ (吉林农业大学学报), 2001, 23(4): 6–10 (in Chinese with English abstract)

[6]Smith J S C, Chin E C L, Shu H, Smith O S. An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): Comparison with data from RFLPs and pedigree. Theor App1 Genet, 1997, 95: 163–173

[7]Wang F-G(王风格), Zhao J-R(赵久然), Guo J-L(郭景伦), She H-D(佘花娣), Chen G(陈刚). Comparison of three DNA fingerprint analyzing methods for maize cultivars’ identification. Mol Plant Breed (分子植物育种), 2003, 1(5): 655–661 (in Chinese with English abstract)

[8]Li L(李莉), Yang J-B(杨剑波), Machill D J, Colowit P M. Comparison of different detection methods for rice SSR analysis. Chin J Rice Sci (中国水稻科学), 2000, l4(3): 185–l88 (in Chinese with English abstract)

[9]Li W(李伟), Zheng Y-L(郑有良), Wei Y-M(魏育明), Yan Z-H(颜泽洪), Lan X-J(兰秀锦). Molecular identification of new wheat cultivar Chuannong 16. J Triticeae Crops (麦类作物学报), 2004, 24(1): 6–l0 (in Chinese with English abstract)

[10]Lu G-Y(陆光远), Wu X-M(伍晓明), Zhang D-X(张冬晓), Liu F-L(刘凤兰), Chen B-Y(陈碧云), Gao G-Z(高桂珍), Xu K(许鲲). SSR-based evaluation of distinctness and uniformity of rapeseed (Brassica napus L.) varieties under Chinese National Official Field Tests. Sci Agric Sin (中国农业科学), 2008, 41(1): 32–42 (in Chinese with English abstract)

[11]Luan Y-S(栾雨时), An L-J(安利佳), Wang B-Q(黄百渠), Zhang W-J(张文俊), He M-Y(何孟元). Using simple sequence repeat probe for DNA fingerprints in tomato cultivars. Acta Hort Sin (园艺学报), 1999, 26(1): 51–53 (in Chinese with English abstract)

[12]Cui Y-H(崔艳华), Qiu L-J(邱丽娟), Chang R-Z(常汝镇), Lü W-H(吕文河). Examination of representiveness of the primary core collection in Huanghuai summer sowing soybean (Glycine max) using SSR. J Plant Genet Resour (植物遗传资源学报), 2003, 4(1): 9–l5 (in Chinese with English abstract)

[13]Dixit A, Jin M H, Chung J W, Yu J W, Chung H K, Ma K H, Park Y J, Cho E G. Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.). Mol Ecol Notes, 2005, 5: 736–738

[14]Wei L-B(魏利斌), Zhang H-Y(张海洋), Zheng Y-Z(郑永战), Guo W-Z(郭旺珍), Zhang T-Z(张天真). Development and utilization of EST-derived microsatellites in sesame (Sesamum indicum L.). Acta Agron Sin (作物学报), 2008, 34(12): 2077–2084 (in Chinese with English abstract)

[15]Lu G-Y(陆光远), Yang G-S(杨光圣), Fu T- D(傅廷栋). An effective assay of detecting SSR marker in rapeseed. Chin J Oil Crops Sci (中国油料作物学报), 2003, 25: 79–81 (in Chinese with English abstract)

[16]Zhang B(张鹏), Zhang H-Y(张海洋), Guo W-Z(郭旺珍), Zheng Y-Z(郑永战), Wei L-B(魏利斌), Zhang T-Z(张天真). Genetic diversity analysis of Sesamum indicum L. germplasms using SRAP and EST-SSR markers. Acta Agron Sin (作物学报), 2007, 33 (10): 1696–1702 (in Chinese with English abstract)

[17]Lombard V, Baril C P, Dubreuil P, Blouet F, Zhang D. Genetic relationships and fingerprinting of rapeseed cultivars by AFLP: consequences for varietal registration. Crop sci, 2000, 40: 1417–1425

[18]Piry S, Alapetite A, Cornuet J M, Paetkau D, Baudouin L, Estoup A. GeneClass2: a software for genetic assignment and first-generation migrant detection. J Heredity, 2004, 95: 536–539

[19]Troyer A F, Rocheford T R. Germplasm ownership: related corn inbreds. Crop Sci, 2002, 42: 3–10

[20]LI J-F(李俊芳), Zhang X-Y(张雪原), Sun S-X(孙世贤), Wang S-C(王守才). Analysis of maize variety in national maize main production area using SSR technique: Ⅰ. Evaluation of distinctness and uniformity of maize variety. J Maize Sci (玉米科学), 2006, 14(6): 38–42 (in Chinese with English abstract)

[21]Heckenberger M, van der Voort J R, Melchinger A E, Peleman J, Bohn M. Variation of DNA fingerprints among accessions within maize inbred lines and implications for identification of essentially derived varieties: II. Genetic and technical sources of variation in AFLP data and comparison with SSR data. Mol Breed, 2003, 12: 97–106.

[22]Smith J S C, Smith O S. The description and assessment of distances between inbred lines of maize: II. The utility of morphological, biochemical, and genetic descriptors and a scheme for testing of distinctiveness between inbred lines. Maydica, 1989, 34: 151–161

[23]ASSINSEL. 2000. DUS testing: Phenotype vs. genotype [Online]. ASSINSEL, Position Paper adopted at the Rome Congress in May 2000. http://www.worldseed.org/Position_papers/PhenotypeGenotype.htm [verified 30 Nov. 2004]. International Association of Plant Breeders for the Protection of Plant Varieties (ASSINSEL), Nyon, Switzerland
[1] Zhang Ying-Xing, Bheel Chander Kumar, Song Yu-Zhen, Wang Yue, Cao Yue, Khound Rituraj, Santra Dipak Kumar, Cao Xiao-Ning, Wang Rui-Yun. Screening and phenotypic characterization of EMS-induced mutants with elite agronomic traits in broomcorn millet [J]. Acta Agronomica Sinica, 2026, 52(5): 1388-1400.
[2] Tian Chun-Yan, Lu Xin, Wu Cai-Wen, Xu Chao-Hua, Liu Jia-Yong, Bian Xin, Tao Lian-An. Genetic diversity analysis and breeding potential evaluation of innovative sugarcane germplasm based on fluorescent SSR [J]. Acta Agronomica Sinica, 2026, 52(4): 1057-1072.
[3] WANG Hao-Chen, WANG Ke-Jing, HAN Juan, LI Xiang-Hua. Spatial genetic structure characteristics of natural populations of Glycine tomentella in two representative habitats in the southeast coast, China: a study of intrapopulation sampling strategy [J]. Acta Agronomica Sinica, 2025, 51(11): 2875-2885.
[4] ZHENG Dong, ZHOU Xian-Li, TENG Chang-Cai, HOU Wan-Wei, ZHANG Hong-Yan, LIU Yu-Jiao. Genetic relationship analysis and fingerprints construction of faba bean varieties in Qinghai province based on SSR markers [J]. Acta Agronomica Sinica, 2025, 51(1): 79-90.
[5] KUANG Bo-Wen, WEI Ni, LIU Jin-Dian, CHEN Mei-Yan, MAO Xing-Jie, DUAN Wei-Xing, YANG Xi-Ping. Development of SSR markers and database based on genomes of sugarcane and its relatives [J]. Acta Agronomica Sinica, 2025, 51(1): 103-116.
[6] DING Yi-Bing, XIN Xu-Xia, FENG Zhi-Zun, GUO Juan, CAO Yue, CHEN Xi-Ming, WANG Xiao-Dan, CAO Xiao-Ning, SANTRA Dipak K, CHEN Ling, QIAO Zhi-Jun, WANG Rui-Yun. Core germplasm identification of proso millet in spring sowing area of Northeast China using fluorescent microsatellite markers [J]. Acta Agronomica Sinica, 2024, 50(7): 1728-1739.
[7] DING Yi-Bing, XIN Xu-Xia, FENG Zhi-Zun, CAO Yue, GUO Juan, Dipak K SANTRA, WANG Rui-Yun, CHEN Xi-Ming. Core germplasm and DNA molecular identity card of proso millet in Northeast Spring sowing region in China [J]. Acta Agronomica Sinica, 2024, 50(5): 1181-1192.
[8] TIAN Chun-Yan, BIAN Xin, LANG Rong-Bin, YU Hua-Xian, TAO Lian-An, AN Ru-Dong, DONG Li-Hua, ZHANG Yu, JING Yan-Fen. Association analysis of three breeding traits with SSR markers and exploration of elite alleles in sugarcane [J]. Acta Agronomica Sinica, 2024, 50(2): 310-324.
[9] CHEN Tian, LI Yu-Ying, RONG Er-Hua, WU Yu-Xiang. Character identification and floral organ transcriptome analysis on artificial allotetraploids of Gossypium hirsutum L. [J]. Acta Agronomica Sinica, 2024, 50(2): 325-339.
[10] CHEN Zhi-Kai, ZHOU Xian-Li, ZHANG Hong-Yan, TENG Chang-Cai, HOU Wan-Wei. SSR association analysis of the protein content of 320 faba bean germplasms [J]. Acta Agronomica Sinica, 2024, 50(11): 2775-2786.
[11] CAO Yue, Zhang Li-Yuan, XIN Xu-Xia, FENG Zhi-Zun, GUO Juan, WANG Xiao-Dan, CAO Xiao-Ning, SANTRA Dipak K, CHEN Ling, QIAO Zhi-Jun, WANG Rui-Yun. Construction of DNA molecular identity card of proso millet in Ningxia based on fluorescent SSR [J]. Acta Agronomica Sinica, 2024, 50(11): 2699-2711.
[12] TANG Cheng-Han, CHEN Hui-Zhe, YE Tian-Cheng, ZHANG Yu-Ping, XIANG Jing, ZHANG Yi-Kai, WANG Zhi-Gang, WANG Ya-Liang. Effect of planting uniformity with machine on yield construction and quality formation of rice [J]. Acta Agronomica Sinica, 2024, 50(10): 2625-2636.
[13] GUO Juan, XIN Xu-Xia, FENG Zhi-Zun, CAO Yue, WANG Xiao-Dan, CAO Xiao-Ning, SANTRA Dipak K, CHEN Ling, QIAO Zhi-Jun, WANG Rui-Yun. Molecular identification of broomcorn millet germplasm resources in Shaanxi based on SSR [J]. Acta Agronomica Sinica, 2024, 50(10): 2643-2653.
[14] WANG Qian, ZHANG Li-Yuan, XU Yue, LI Hai, LIU Shao-Xiong, XUE Ya-Peng, LU Ping, WANG Rui-Yun, LIU Min-Xuan. High motif EST-SSR markers development and genetic diversity evaluation for 200 core germplasms in proso millet [J]. Acta Agronomica Sinica, 2023, 49(8): 2308-2318.
[15] CHEN Yi-Hang, TANG Chao-Chen, ZHANG Xiong-Jian, YAO Zhu-Fang, JIANG Bing-Zhi, WANG Zhang-Ying. Construction of core collection of sweetpotato based on phenotypic traits and SSR markers [J]. Acta Agronomica Sinica, 2023, 49(5): 1249-1261.
Viewed
Full text


Abstract

Cited

  Shared   
  Discussed   
No Suggested Reading articles found!