Acta Agronomica Sinica ›› 2024, Vol. 50 ›› Issue (8): 1948-1960.doi: 10.3724/SP.J.1006.2024.31052
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
PENG Xiao-Ai1(), LU Mao-Ang1, ZHANG Ling1, LIU Tong1, CAO Lei1, SONG You-Hong1, ZHENG Wen-Yin1, HE Xian-Fang2,*(), ZHU Yu-Lei1,*()
[1] |
Zörb C, Ludewig U, Hawkesford M J. Perspective on wheat yield and quality with reduced nitrogen supply. Trends Plant Sci, 2018, 23: 1029-1037.
doi: S1360-1385(18)30192-4 pmid: 30249481 |
[2] | Guzman C, Peña R J, Singh R, Autrique E, Dreisigacker S, Crossa J, Rutkoski J, Poland J, Battenfield S. Wheat quality improvement at CIMMYT and the use of genomic selection on it. Appl Translat Genom, 2016, 11: 3-8. |
[3] | Muqaddasi Q H, Brassac J, Ebmeyer E, Kollers S, Korzun V, Argillier O, Stiewe G, Plieske J, Ganal M W, Röder M S. Prospects of GWAS and predictive breeding for European winter wheat’s grain protein content, grain starch content, and grain hardness. Sci Rep, 2020, 10: 1-17. |
[4] | Shewry P R, Hey S. Do “ancient” wheat species differ from modern bread wheat in their contents of bioactive components? J Cereal Sci, 2015, 65: 236-243. |
[5] | 赵俊杰. 小麦52个产量、品质、抗性和适应性基因的育种选择研究. 中国农业科学院硕士学位论文, 北京, 2018. |
Zhao J J. Breeding Selection on 52 Genes Controlling Yield, Quality, Stress Resistance and Adaptation in Bread Wheat. MS Thesis of Chinese Academy of Agricultural Sciences, Beijing, China, 2018 (in Chinese with English abstract). | |
[6] |
Yang Y, Chai Y, Zhang X, Lu S, Zhao Z, Wei D, Chen L, Hu Y G. Multi-locus GWAS of quality traits in bread wheat: mining more candidate genes and possible regulatory network. Front Plant Sci, 2020, 11: 1091.
doi: 10.3389/fpls.2020.01091 pmid: 32849679 |
[7] | Huang X H, Zhao Y, Wei X H, Li C Y, Wang A H, Zhao Q, Li W J, Guo Y L, Deng L W, Zhu C R, Fan D L, Lu Y Q, Weng Q J, Liu K Y, Zhou T Y, Jing Y F, Si L Z, Dong G J, Huang T, Lu T T, Feng Q, Qian Q, Li J Y, Han B. Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet, 2012, 44: 32-39. |
[8] | 杨豪, 向仕华, 刘丽, 杨雪, 舒英杰, 何庆元. 川渝大豆生育期性状的全基因组关联分析. 作物学报, 2023, 49: 2727-2742. |
Yang H, Xiang S H, Liu L, Yang X, Shu Y J, He Q Y. Genome-wide association analysis of growth period traits in soybean of Sichuan and Chongqing. Acta Agron Sin, 2023, 49: 2727-2742 (in Chinese with English abstract).
doi: 10.3724/SP.J.1006.2023.24210 |
|
[9] | Kumar A, Mantovani E E, Simsek S, Jain S L, Elias E M, Mergoum M. Genome wide genetic dissection of wheat quality and yield related traits and their relationship with grain shape and size traits in an elite × non-adapted bread wheat cross. PLoS One, 2019, 14: e0221826. |
[10] | Chen J H, Zhang F Y, Zhao C J, Lv G G, Sun C W, Pan Y B, Guo X Y, Chen F. Genome-wide association study of six quality traits reveals the association of the TaRPP13L1 gene with flour colour in Chinese bread wheat. Plant Biotechnol J, 2019, 17: 2106-2122. |
[11] | Lou H Y, Zhang R Q, Liu Y T, Guo D D, Zhai S S, Chen A Y, Zhang Y F, Xie C J, You M S, Peng H R, Liang R Q, Ni Z F, Sun Q X, Li B Y. Genome-wide association study of six quality-related traits in common wheat (Triticum aestivum L.) under two sowing conditions. Theor Appl Genet, 2021, 134: 399-418. |
[12] |
Gao L, Meng C S, Yi T F, Xu K, Cao H W, Zhang S H, Yang X J, Zhao Y. Genome-wide association study reveals the genetic basis of yield-and quality-related traits in wheat. BMC Plant Biol, 2021, 21: 144.
doi: 10.1186/s12870-021-02925-7 pmid: 33740889 |
[13] | Liu J J, Luo W, Qin N N, Ding P Y, Zhang H, Yang C C, Mu Y, Tang H P, Liu Y X, Li W, Jiang Q T, Chen G Y, Wei Y M, Zheng Y L, Liu C J, Lan X J, Ma J. A 55K SNP array-based genetic map and its utilization in QTL mapping for productive tiller number in common wheat. Theor Appl Genet, 2018, 131: 2439-2450. |
[14] | Ren T H, Hu Y S, Tang Y Z, Li C S, Yan B J, Ren Z L, Tan F Q, Tang Z X, Fu S L, Li Z. Utilization of a wheat 55K SNP array for mapping of major QTL for temporal expression of the tiller number. Front Plant Sci, 2018, 9: 333. |
[15] |
Wu J H, Huang S, Zeng Q D, Liu S J, Wang Q L, Mu J M, Yu S Z, Han D J, Kang Z S. Comparative genome-wide mapping versus extreme pool-genotyping and development of diagnostic SNP markers linked to QTL for adult plant resistance to stripe rust in common wheat. Theor Appl Genet, 2018, 131: 1777-1792.
doi: 10.1007/s00122-018-3113-7 pmid: 29909527 |
[16] | Mo Z Q, Zhu J, Wei J T, Zhou J G, Xu Q, Tang H P, Mu Y, Deng M, Jiang Q T, Liu Y X, Chen G Y, Wang J R, Qi P F, Li W, Wei Y M, Zheng Y L, Lan X J, Ma J. The 55K SNP-based exploration of QTLs for spikelet number per spike in a tetraploid wheat (Triticum turgidum L.) population: Chinese landrace “Ailanmai” × wild emmer. Front Plant Sci, 2021, 12: 732837. |
[17] | Xiong H C, Li Y T, Guo H J, Xie Y D, Zhao L S, Gu J Y, Zhao S R, Ding Y P, Liu L X. Genetic mapping by integration of 55K SNP array and KASP markers reveals candidate genes for important agronomic traits in hexaploid wheat. Front Plant Sci, 2021, 12: 628478. |
[18] |
严勇亮, 时晓磊, 张金波, 耿洪伟, 肖菁, 路子峰, 倪中福, 丛花. 春小麦籽粒主要品质性状的全基因组关联分析. 中国农业科学, 2021, 54: 4033-4047.
doi: 10.3864/j.issn.0578-1752.2021.19.001 |
Yan Y L, Shi X L, Zhang J B, Geng H W, Xiao J, Lu Z F, Ni Z F, Cong H. Genome-wide association study of grain quality related characteristics of spring wheat. Sci Agric Sin, 2021, 54: 4033-4047 (in Chinese with English abstract).
doi: 10.3864/j.issn.0578-1752.2021.19.001 |
|
[19] | 赵春. 不同生态条件下小麦籽粒品质形成及其生理基础. 山东农业大学, 山东泰安, 2006. |
Zhao C. Effects of Ecological Condition on Grain Quality Formation in Winter Wheat and Its Physiological Basis. PhD Dissertation of Shandong Agricultural University, Tai’an, Shandong, China, 2006 (in Chinese with English abstract). | |
[20] |
董一帆, 任毅, 程宇坤, 王睿, 张志辉, 时晓磊, 耿洪伟. 冬小麦籽粒主要品质性状的全基因组关联分析. 中国农业科学, 2023, 56: 2047-2063.
doi: 10.3864/j.issn.0578-1752.2023.11.002 |
Dong Y F, Ren Y, Cheng Y K, Wang R, Zhang Z H, Shi X L, Geng H W. Genome-wide association traits in winter wheat study of grain main quality related. Sci Agric Sin, 2023, 56: 2047-2063 (in Chinese with English abstract). | |
[21] |
Yu J M, Pressoir G, Briggs W H, Bi I V, Yamasaki M, Doebley J F, McMullen M D, Gaut B S, Nielsen D M, Holland J B, Kresovich S, Buckler E S. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet, 2006, 38: 203-208.
doi: 10.1038/ng1702 pmid: 16380716 |
[22] |
谢磊, 任毅, 张新忠, 王继庆, 张志辉, 石书兵, 耿洪伟. 小麦穗发芽性状的全基因组关联分析. 作物学报, 2021, 47: 1891-1902.
doi: 10.3724/SP.J.1006.2021.01078 |
Xie L, Ren Y, Zhang X Z, Wang J Q, Zhang Z H, Shi S B, Geng H W. Genome-wide association study of pre-harvest sprouting traits in wheat. Acta Agron Sin, 2021, 47: 1891-1902 (in Chinese with English abstract).
doi: 10.3724/SP.J.1006.2021.01078 |
|
[23] |
朱玉磊, 王升星, 赵良侠, 张德新, 胡建帮, 曹雪连, 杨亚杰, 常成, 马传喜, 张海萍. 以关联分析发掘小麦整穗发芽抗性基因分子标记. 作物学报, 2014, 40: 1725-1732.
doi: 10.3724/SP.J.1006.2014.01725 |
Zhu Y L, Wang S X, Zhao L X, Zhang D X, Hu J B, Cao X L, Yang Y J, Chang C, Ma C X, Zhang H P. Exploring molecular markers of preharvest sprouting resistance gene using wheat intact spikes by association analysis. Acta Agron Sin, 2014, 40: 1725-1732 (in Chinese with English abstract). | |
[24] | Gao Y T, Xu X R, Jin J J, Duan S N, Zhen W C, Xie C J, Ma J. Dissecting the genetic basis of grain morphology traits in Chinese wheat by genome wide association study. Euphytica, 2021, 217: 1-12. |
[25] | Hao S Y, Lou H Y, Wang H W, Shi J H, Liu D, Baogerile, Tao J G, Miao S M, Pei Q C, Yu L L, Wu M, Gao M, Zhao N H, Dong J C, You M S, Xin M M. Genome-wide association study reveals the genetic basis of five quality traits in Chinese wheat. Front Plant Sci, 2022, 13: 835306. |
[26] | 翟俊鹏. 普通小麦主要农艺性状和品质性状的全基因组关联分析. 河南农业大学, 河南郑州, 2019. |
Zhai J P. Genome-wide Association Study for Main Agronomic and Quality Traits in Common Wheat. MS Thesis of Henan Agricultural University, Zhengzhou, Henan, China, 2019 (in Chinese with English abstract). | |
[27] |
张红梅, 熊雅文, 许文静, 张威, 王琼, 刘晓庆, 刘慧, 崔晓艳, 陈新, 陈华涛. 大豆R6期籽粒氨基酸含量的全基因组关联分析. 作物学报, 2023, 49: 3277-3288.
doi: 10.3724/SP.J.1006.2023.34031 |
Zhang H M, Xiong Y W, Xu W J, Zhang W, Wang Q, Liu X Q, Liu H, Cui X Y, Chen X, Chen H T. Genome-wide association study for amino acid content at R6 stage in soybean (Glycine max L.) seed. Acta Agron Sin, 2023, 49: 3277-3288 (in Chinese with English abstract). | |
[28] |
张芳, 任毅, 曹俊梅, 李法计, 夏先春, 耿洪伟. 基于SNP标记的小麦籽粒性状全基因组关联分析. 中国农业科学, 2021, 54: 2053-2064.
doi: 10.3864/j.issn.0578-1752.2021.10.002 |
Zhang F, Ren Y, Cao J M, Li F J, Xia X C, Geng H W. Genome-wide association analysis of wheat grain size related traits based on SNP markers. Sci Agric Sin, 2021, 54: 2053-2064 (in Chinese with English abstract).
doi: 10.3864/j.issn.0578-1752.2021.10.002 |
|
[29] |
吴新元, 芦静, 张新忠, 黄天荣, 李建疆, 周安定, 梁晓东, 曹俊梅, 高永红, 曾潮武. 新疆小麦品质生态区划研究. 新疆农业科学, 2017, 54: 1373-1383.
doi: 10.6048/j.issn.1001-4330.2017.08.001 |
Wu X Y, Lu J, Zhang X Z, Huang T R, Li J J, Zhou A D, Liang X D, Cao J M, Gao Y H, Zeng C W. Study of ecological division for wheat quality in Xinjiang. Xinjiang Agric Sci, 2017, 54: 1373-1383 (in Chinese with English abstract).
doi: 10.6048/j.issn.1001-4330.2017.08.001 |
|
[30] | Frova C. The plant glutathione transferase gene family: genomic structure, functions, expression and evolution. Physiol Plant, 2003, 119: 469-479. |
[31] | George S, Venkataraman G, Parida A. A chloroplast-localized and auxin-induced glutathione S-transferase from phreatophyte Prosopis juliflora confer drought tolerance on tobacco. J Plant Physiol, 2010, 167: 311-318. |
[32] | 付爱根, 赵锋锋, 王娟, 郝亚琦. 植物叶绿体细胞色素b6f复合体的研究进展. 山地农业生物学报, 2015, 34: 1-9. |
Fu A G, Zhao F F, Wang J, Hao Y Q. Research progress of plant chloroplast cytochrome b6f complex. J Mountain Agric Biol, 2015, 34: 1-9 (in Chinese with English abstract). | |
[33] | Diao P F, Chen C, Zhang Y Z, Meng Q W, Lv W, Ma N N. The role of NAC transcription factor in plant cold response. Plant Signal Behav, 2020, 15: 1785668. |
[34] | 马雪祺, 阴艳红, 冯婧娴, 陈万生, 孙连娜, 肖莹. 植物NAC转录因子研究进展. 植物生理学报, 2021, 57: 2225-2234. |
Ma X Q, Yin Y H, Feng J X, Chen W S, Sun L N, Xiao Y. Research progress of NAC transcription factors in plant. Plant Physiol J, 2021, 57: 2225-2234 (in Chinese with English abstract). | |
[35] | 贾琪, 孙松, 孙天昊, 林文雄. F-box蛋白家族在植物抗逆响应中的作用机制. 中国生态农业学报, 2018, 26: 1125-1136. |
Jia Q, Sun S, Sun T H, Lin W X. Mechanism of F-box protein family in plant resistance response to environmental stress. Chin J Eco-Agric, 2018, 26: 1125-1136 (in Chinese with English abstract). | |
[36] |
Buhot N, Douliez J P, Jacquemard A, Marion D, Tran V, Maume B F, Milat M L, Ponchet M, Mikès V, Kader J C, Blein J P. A lipid transfer protein binds to a receptor involved in the control of plant defence responses. FEBS Lett, 2001, 509: 27-30.
doi: 10.1016/s0014-5793(01)03116-7 pmid: 11734200 |
[37] | Hemalatha M S, Manu B T, Bhagwat S G, Leelavathi K, Prasada Rao U J S. Protein characteristics and peroxidase activities of different Indian wheat varieties and their relationship to chapati-making quality. Eur Food Res Technol, 2007, 225: 463-471. |
[38] | 胡瑞波, 田纪春. 小麦主要品质性状与面粉色泽的关系. 麦类作物学报, 2006, 26: 96-101. |
Hu R B, Tian J C. Relationship between main quality characteristics and wheat flour color. J Triticeae Crops, 2006, 26: 96-101 (in Chinese with English abstract). | |
[39] | 胡新中, 卢为利, 阮侦区, 罗勤贵, 郑建梅, 欧阳韶晖, 张国权. 影响小麦面粉白度的品质指标分析. 中国农业科学, 2007, 40: 1142-1149. |
Hu X Z, Lu W L, Ruan Z Q, Luo Q G, Zheng J M, Ou-Yang S H, Zhang G Q. Analysis of the quality indices affecting wheat flour whiteness. Sci Agric Sin, 2007, 40: 1142-1149 (in Chinese with English abstract). |
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