[1]Zhang H-Y(张红宇), Peng H(彭海), Li Y(李云), Xu P-Z(徐培洲), Wang X-D(汪旭东), Wu X-J(吴先军). Patterns of DNA cytosine methylation between haploids and corresponding diploids in rice. Chin Sci Bull (科学通报), 2006, 51(13): 1529–1535 (in Chinese)



[2]Peng H(彭海), Zhang H-Y(张红宇), Li Y(李云), Xu P-Z(徐培洲), Wang X-D(汪旭东), Wu X-J(吴先军). Natural homologous triploidization and DNA methylation of twin-seedling rice SARII-628. Chin J Rice Sci (中国水稻科学), 2006, 20(5): 469–474 (in Chinese with English abstract)



[3]Wu S-H(吴绍华), Xue J-J(薛晶晶), Zhang H-Y(张红宇), Xu P-Z(徐培洲), Wu X-J(吴先军). Analysis of special DNA methylated sites between haploid of twin-seedling and its hybrids in rice. Chin J Rice Sci (中国水稻科学), 2011, 25(3): 249–253 (in Chinese with English abstract)



[4]Jiao Y N, Wickett N J, Ayyampalayam S, Chanderbali A S, Landherr L, Ralph P E, Tomsho L P, Hu Y, Liang H Y, Soltis P S, Soltis D E, Clifton S W, Schlarbaum S E, Schuster S C, Ma H, Leebens-Mack J, dePamphilis C W. Ancestral polyploidy in seed plants and angiosperms. Nature, 2011, 473: 97–100



[5]Feng S, Cokus S J, Zhang X, Chen P Y, Bostick M, Goll M G, Hetzel J, Jain J, Strauss S H, Halpern M E, Ukomadu C, Sadler K C, Pradhan S, Pellegrini M, Jacobsen S E. Conservation and divergence of methylation patterning in plants and animals. Proc Natl Acad Sci USA, 2010, 107: 8689–8694



[6]Zemach A, McDaniel I E, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science, 2010, 328: 916–919



[7]Cuperus J T., Fahlgren N, Carrington J C. Evolution and functional diversification of MIRNA genes. Plant Cell, 2011, 23: 431–442



[8]Fahlgren N, Jogdeo S, Kasschau K D, Sullivan C M, Chapman E J, Laubinger S, Smith L M, Dasenko M, Givan S A, Weigel D, Carrington J C. MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. Plant Cell, 2010, 22: 1074–1089



[9]Wang S, Zhu Q H, Guo X, Gui Y, Bao J, Helliwell C, Fan L. Molecular evolution and selection of a gene encoding two tandem microRNAs in rice. FEBS Lett, 2007, 581: 4789–4793



[10]Xu Y-M(徐艳敏), Guo Y-H(郭艳合), Liu L(刘立), Cai R(蔡荣), Qian C(钱程). The reciprocal modulation between epigenetic and microRNA and the application for treatment of malignant tumors. Prog Biochem Biophys (生物化学与生物物理进展), 2008, 35(12): 1343–1350 (in Chinese with English abstract)



[11]Weber B, Stresemann C, Brueckner B, Lyko F. Methylation of human microRNA genes in normal and neoplastic cells. Cell Cycle, 2007, 6: 1001–1005



[12]Onodera Y, Haag J R, Ream T, Nunes P C, Pontes O, Pikaard C S. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell, 2005, 120: 613–622



[13]Zilberman D, Cao X, Jacobsen S E. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science, 2003, 299: 716–719



[14]Wu L, Zhou H, Zhang Q, Zhang J, Ni F, Liu C, Qi Y. DNA methylation mediated by a microRNA pathway. Mol Cell, 2010, 38: 465–475



[15]Panaud O, Chen X, McCouch S R. Development of microsatellite markers and characterization of simple length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet, 1996, 252: 597–607



[16]Xiong L Z, Xu C G, Saghai Maroof M A, Zhang Q. Patterns of cytosine methylation in an elite rice hybrid and its parental lines detected by a methylation-sensitive amplification polymorphism technique. Mol Gen Genet, 1999, 261: 439–446



[17]Allen E, Xie Z, Gustafson A M, Carrington J C. microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell, 2005, 121: 207–221



[18]Fahlgren N, Howell M D, Kasschau K D, Chapman E J, Sullivan C M, Cumbie J S, Givan S A, Law T F, Grant S R, Dangl J L, Carrington J C. High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes. PLoS One, 2007, 2: e219



[19]Chen X. A microRNA as a translational repressor of APETALA2 in Arabidopsis flower development. Science, 2004, 303: 2022–2025



[20]Li J, Yang Z, Yu B, Liu J, Chen X. Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis. Curr Biol, 2005, 15: 1501–1507



[21]Jia X Y, Yan J, Tang G L. MicroRNA-mediated DNA methylation in plants. Front Biol, 2011, 6: 133–139



[22]Bao N, Lye K W, Barton M K. MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev Cell, 2004, 7: 653–662



[23]Khraiwesh B, Arif M A, Seumel G I, Ossowski S, Weigel D, Reski R, Frank W. Transcriptional control of gene expression by microRNAs. Cell, 2010, 140: 111–122