| [1]Razzaghi F, Plauborg F, Jacobsen S, Jensen C R, Andersen M N. Effect of nitrogen and water availability of three soil types on yield, radiation use efficiency and evapotranspiration in field-grown quinoa. Agric Water Manag, 2012, 109: 20–29
[2]Adolf V I, Jacobsen S, Shabala S. Salt tolerance mechanisms in quinoa(Chenopodium quinoaWilld.). Environ Exp Bot, 2013, 92: 43–54
[3]Ogungbenle H N. Nutritional evaluation and functional properties of quinoa (Chenopodium quinoa) flour. Intl J Food SciNutr, 2003, 54: 153–158
[4]Fairbanks D J, Waldrigues A, Ruas C F, Ruas P M, Maughan P J, Robison L R, Andersen W R, Riede C R, Pauley C S, Caetano L G. Efficient characterization of biological diversity using field DNA extraction and random amplified polymorphic DNA markers. Rev Brazil Genet, 1993, 16: 11–22
[5]Mason S L, Stevens M R, Jellen E N, Bonifacio A, Fairbanks D J, Coleman C E, Mccarty R R, Rasmussen A G, Maughan P J. Development and use of microsatellite markers for germplasm characterization in quinoa (Chenopodium quinoaWilld.). Crop Sci, 2005, 45: 1618–1630
[6]Coles N D, Coleman C E, Christensen S A, Jellen E N, Stevens M R, Bonifacio A, Rojas-Beltran J A, Fairbanks D J, Maughan P J. Development and use of an expressed sequenced tag library in quinoa (Chenopodium quinoa Willd.) for the discovery of single nucleotide polymorphisms. Plant Sci, 2005, 168: 439–447
[7]Fuentes F F, Bazile D, Bhargava A, Martínez E A. Implications of farmers’ seed exchanges for on-farm conservation of quinoa, as revealed by its genetic diversity in Chile. J AgricSci, 2012, 150: 702–716
[8]Jarvis D E, Maughan P J, Kopp O R, Jellen E N, Mallory M A, Pattee J, BonifacioA, Coleman C E, Stevens M R, Fairbanks D J. Simple sequence repeat marker development and genetic mapping in quinoa (Chenopodium quinoa Willd.). J Genet, 2008, 87: 39–51
[9]Maughan P J, Smith S M, Rojas-Beltrán J A, Elzinga D, Raney J A, Jellen E N, Bonifacio A, Udall J A, Fairbanks D J. Single nucleotide polymorphisms identification, characterization and linkage mapping in Chenopodium quinoa. Plant Genome, 2012, 5: 1–7
[10]Eckardt N A. Sequencing the rice genome. Plant Cell, 2000, 12: 2011–2017
[11]Martienssen R A, Rabinowicz P D, O Shaughnessy A, Mccombie W R. Sequencing the maize genome. CurrOpin Plant Biol, 2004, 7: 102–107
[12]Stevens M R, Coleman C E, Parkinson S E, Maughan P J, Zhang H B, Balzotti M R, Kooyman D L, Arumuganathan K, Bonifacio A, Fairbanks D J, Jellen E N, Stevens J J. Construction of a quinoa (Chenopodium quinoaWilld.) BAC library and its use in identifying genes encoding seed storage proteins. TheorAppl Genet, 2006, 112: 1593–1600
[13]Palomino G, Hernández L T, de la Cruz Torres E. Nuclear genome size and chromosome analysis in Chenopodium quinoa and C.berlandieri subsp. nuttalliae. Euphytica, 2008, 164: 221–230
[14]Fuentes F, Bhargava A. Morphological analysis of quinoa germplasm grown under lowland desert conditions. J Agron Crop Sci, 2011, 197: 124–134
[15]Xia H, Zheng X, Chen L, Gao H, Yang H, Long P, Rong J, Lu B, Li J, Luo L. Genetic differentiation revealed by selective loci of drought-responding EST-SSRs between upland and lowland rice in China. PloSOne, 2014, 9: e106352
[16]Asadi A A, Monfared S R. Characterization of EST-SSR markers in durum wheat EST library and functional analysis of SSR-containing EST fragments. Mol Genet Genom, 2014, 289: 625–640
[17]Chuang T, Yang M, Lin C, Hsieh P, Hung L. Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants. BMC Plant Biol, 2015, 15: 39–53
[18]Grabherr M G, Haas B J, Yassour M, Levin J Z, Thompson D A, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol, 2011, 29: 644–652
[19]Nei M. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 1978, 89: 583–590
[20]Ott J. Strategies for characterizing highly polymorphic markers in human gene mapping. Am J Human Genet, 1992, 51: 283–290
[21]Rohlf F J. NTSYS-pc: Numerical taxonomy system. ver. 2.1.Setauket, NY: Exeter Publishing Ltd. 2002
[22]Tautz D, Renz M. Simple sequences are ubiquitous repetitive components of eukaryotic genomes.Nucl Acids Res, 1984, 12: 4127–4138
[23]潘海涛, 汪俊君, 王盈盈, 齐照良, 李斯深. 小麦EST-SSR的开发和遗传作图. 中国农业科学,2010, 24: 452–461
Pan H T, Wang J J, Wang Y Y, Qi Z L, Li S S. Development and mapping of EST-SSR marker in wheat. SciAgricSin, 2010, 24: 452–461 (in Chinese with English abstract)
[24]赖勇, 王鹏喜, 范贵强, 司二静, 王晋, 杨轲, 孟亚雄, 李葆春, 马小乐, 尚勋武, 王化俊. 大麦SSR标记遗传多样性及其与农艺性状关联分析. 中国农业科学, 2013,27: 233–242
Lai Y, Wang P X, Fan G Q, Si E J, Wang J, Yang K, Meng Y X, Li B C, Ma X L, Shang X W, Wang H J. Genetic diversity and association analysis using SSR markers in barley. SciAgricSin, 2013, 27: 233–242 (in Chinese with English abstract)
[25]宋海斌, 崔喜波, 马鸿艳, 朱子成, 栾非时. 基于SSR标记的甜瓜品种(系)DNA指纹图谱库的构建. 中国农业科学, 2012, 26: 2676–2689
Song H B, Cui X B, Ma H Y, Zhu Z C, Luan F S. Construction of DNA fingerprint database based on SSR marker for varieties (lines) of CucumismeloL.SciAgricSin, 2012, 26: 2676–2689 (in Chinese with English abstract)
[26]王西成, 姜淑苓, 上官凌飞, 曹玉芬, 乔玉山, 章镇, 房经贵. 梨EST-SSR标记的开发及其在梨品种遗传多样性分析中的应用评价. 中国农业科学, 2010, 24: 5079–5087
Wang X C, Jiang S L, Shang-guan L F, Cao Y F, Qiao Y S, Zhang Z, Fang J G. Development of EST-derived SSR markers for pear and evaluation of their application in pear genetic diversity analysis.SciAgricSin, 2010, 24: 5079–5087 (in Chinese with English abstract)
[27]张体付, 葛敏, 韦玉才, 赵涵. 玉米功能性Insertion/Deletion(InDel)分子标记的挖掘及其在杂交种纯度鉴定中的应用. 玉米科学, 2012, 20: 64-68
Zhang T F, Ge M, Wei Y C, Zhao H. Discovery for maize function Insertion/Deletion (InDel) polymorphic marker and its implication in purity identification of maize hybrid seeds. JMaize Sci, 2012, 20: 64–68 (in Chinese with English abstract)
[28]戚维聪, 程计华, 黄邦全, 李坦, 林峰. 基于海甘蓝RNA-Seq序列开发EST-SSR分子标记. 江苏农业学报, 2014, 30: 997–1002
Qi W C, Cheng J H, Huang B Q, Li T, Lin F. Development and characterization of EST-SSRmarkers derived from RNA-Seq in Crambeabyssinica. Jiangsu J AgricSci,2014, 30: 997–1002 (in Chinese with English abstract)
[29]束永俊, 李勇, 吴娜拉胡, 柏锡, 才华, 纪巍, 朱延明. 大豆EST-SNP的挖掘、鉴定及其CAPS标记的开发. 作物学报, 2010, 36: 574–579
Su Y J, Li Y, Wu N L H, Bai X, Cai H, Ji W, Zhu Y M. Mining and identification of SNP from EST sequences and conversion of CAPS markers in soybean. ActaAgronSin, 2010, 36: 574–579 (in Chinese with English abstract)
[30]Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D, Waugh R. Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics, 2000, 156: 847–854
[31]李淑娴, 张新叶, 王英亚, 尹佟明. 桉树EST序列中微卫星含量及相关特征. 植物学报, 2010, 45: 363–371
Li S X, Zhang X Y, Wang Y Y, Yi T M. Content and characteristics of microsatellites detected in expressed sequence tag sequences in Eucalyptus. Chin Bull Bot, 2010, 45: 363–371(in Chinese with English abstract)
[32]Gao L, Tang J, Li H, Jia J. Analysis of microsatellites in major crops assessed by computational and experimental approaches. Mol Breed, 2003, 12: 245–261
[33]程海亮, 陆才瑞, 邹长松, 余道乾, 姜鹏飞, 杨文翠, 张友平, 王巧连, 宋国立. 基于10个棉花腺体相关材料转录组的EST-SSR标记开发. 棉花学报, 2015, 27: 1–8
Cheng H L, Lu C R, Zou C S, Yu D Q, Jiang P F, Yang W C, Zhang Y P, Wang Q L, Song G L. Development of EST-SSR markers in cotton based on the transcriptome information of 10 gland related materials. Cotton Sci, 2015, 27: 1–8(in Chinese with English abstract)
[34]Chabane K, Ablett G A, Cordeiro G M, Valkoun J, Henry R J. EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley. Genet Resourc Crop Evol, 2005, 52: 903–909
[35]Cho Y G, Ishii T, Temnykh S, Chen X, Lipovich L, Mccouch S R, Park W D, Ayres N, Cartinhour S. Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.). TheorAppl Genet, 2000, 100: 713–722
[36]Temnykh S, Declerck G, Lukashova A, Lipovich L, Cartinhour S, Mccouch S. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res, 2001, 11: 1441–1452 |
