作物学报 ›› 2019, Vol. 45 ›› Issue (2): 196-203.doi: 10.3724/SP.J.1006.2019.84100
Mi WU,Nian WANG,Chao SHEN,Cong HUANG,Tian-Wang WEN,Zhong-Xu LIN()
摘要:
碱基插入/缺失(InDel)是基因组中丰富的遗传变异形式。InDel以其密度高、易于基因型分型等优点成为分子标记开发的理想来源。本研究利用262份陆地棉品系重测序数据鉴定的InDel位点, 在全基因组范围内设计了3206个InDel标记并挑选均匀分布的320个标记进行验证。320个标记筛选出87个多态性标记, 多态性率为26.88%。利用多态性标记对不同地理来源的262份陆地棉种质资源进行基因分型, 共检测到160个等位位点; 多态性信息含量(PIC)为0.0836~0.3750, 平均值为0.3073; 基因多样性指数变异范围为0.0874~0.5000, 平均值为0.3876, 表明我国陆地棉遗传基础相对狭窄。群体结构分析将262份陆地棉品系大致划分为2个亚群, 聚类分析和主成分分析的结果与之基本一致。采用混合线性模型(Mixed linear model)对6个纤维品质性状的关联分析检测到65个关联位点(P < 0.01), 各位点对表型变异贡献率为2.57%~8.12%。本研究旨在利用重测序数据开发全基因组范围的可用于凝胶检测的InDel标记, 为棉花种质资源研究和分子标记辅助选择育种提供便捷工具。
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