作物学报 ›› 2023, Vol. 49 ›› Issue (8): 2275-2287.doi: 10.3724/SP.J.1006.2023.21060
林芬芳1,2,3(), 陈星宇1, 周维勋1, 王倩2, 张东彦2,*()
LIN Fen-Fang1,2,3(), CHEN Xing-Yu1, ZHOU Wei-Xun1, WANG Qian2, ZHANG Dong-Yan2,*()
摘要:
小麦赤霉病具有发病快、周期短的特点, 利用深度学习特征提取方法建立病害严重度检测模型, 可为小麦赤霉病的防治提供科学指导。研究于2018—2020年间采集3个品种小麦在扬花期、灌浆期和成熟期的麦穗高光谱数据, 通过形态学处理去除麦芒, 提取出麦穗光谱曲线, 使用多源散射校正对光谱进行去噪处理, 再采用堆栈稀疏自编码器(Stacked Sparse Auto-encoder, SSAE)提取小麦赤霉病的光谱特征, 利用该特征分别结合Softmax分类器和偏最小二乘回归方法构建小麦赤霉病严重度判别和预测模型。通过预训练, 具有12~6个神经元的双层SSAE模型表现较好, 模型均方误差更低, 而且各个病害等级的特征差异明显; 以训练的SSAE模型提取的深度学习特征为基础分别建立赤霉病严重度等级判别模型和严重度预测模型, 在严重度等级判别的分类结果中, 模型的总体精度和Kappa系数分别为88.2%和0.84, 其中“淮麦35”品种的总体精度最高; 在严重度预测模型中, 模型对所有品种测试集的预测决定系数和均方根误差分别为0.927和0.062, 对各品种的预测决定系数均在0.95左右; 相比常见的几种小麦赤霉病光谱指数, 基于SSAE深度学习特征的赤霉病预测模型精度更高。高光谱遥感数据量大、光谱波段多, 堆栈稀疏自编码器通过在自编码器模型中加入稀疏表示的限定条件, 并增加隐含层数及隐含神经元数来构建更为复杂的模型, 所提取的光谱特征更能全方面地体现小麦赤霉病的光谱特征, 利用该特征构建的小麦赤霉病检测模型具有更高的精度, 可为精准监测小麦赤霉病提供科学依据。
[1] | 张昊, 陈万权. 小麦赤霉菌群体结构和病害监控技术研究进展. 植物保护学报, 2022, 49: 250-262. |
Zhang H, Chen W Q. Research progresses on population structure of pathogen and monitoring and controlling technology of Fusarium head blight in wheat. Acta Phytophy Sin, 2022, 49: 250-262. (in Chinese with English abstract) | |
[2] | 陶晡, 齐永志, 屈赟, 曹志艳, 赵绪生, 甄文超.基于增强回归树的海河平原小麦赤霉病预测模型构建与验证. 中国农业 |
科学, 2021, 54: 3860-3870. | |
Tao B, Qi Y Z, Qu Y, Cao Z Y, Zhao X S, Zhen W C. Construction and verification of fusarium head blight prediction model in Haihe plain based on boosted regression tree. Sci Agric Sin, 2021, 54: 3860-3870. (in Chinese with English abstract)
doi: 10.3864/j.issn.0578-1752.2021.18.006 |
|
[3] | 邢瑜琪, 姚卫平, 户雪敏, 戴纪琛, 张太学, 黄卫利, 胡小平. 基于监测预警的小麦赤霉病药剂防治效果评价. 植物保护, 2021, 47: 323-326. |
Xing Y Q, Yao W P, Hu X M, Dai J S, Zhang T X, Huang W L, Hu X P. Evaluation of control effects of pesticides on wheat scab based on monitoring and early warning system. Plant Prot, 2021, 47: 323-326. (in Chinese with English abstract) | |
[4] | 黄文江, 师越, 董莹莹, 叶回春, 邬明权, 崔贝, 刘林毅. 作物病虫害遥感监测研究进展与展望. 智慧农业, 2019, 1(4): 1-11. |
Huang W J, Shi Y, Dong Y Y, Ye H C, Wu M Q, Cui B, Liu L Y. Progress and prospects of crop diseases and pests monitoring by remote sensing. Smart Agric, 2019, 1(4): 1-11. (in Chinese with English abstract)
doi: 10.12133/j.smartag.2019.1.4.201905-SA005 |
|
[5] |
孙瑞琳, 孙全, 孙成明, 刘涛, 李冬双, 吴峰峰. 基于不同平台的小麦病虫害遥感监测研究进展. 中国农机化学报, 2021, 42(3): 142-150.
doi: 10.13733/j.jcam.issn.2095-5553.2021.03.020 |
Sun R L, Sun Q, Sun C M, Liu T, Li D S, Wu F F. Recent advances in remote sensing monitoring on wheat pests and diseases based on different platforms. J Chin Agric Mech, 2021, 42(3): 142-150. (in Chinese with English abstract) | |
[6] | Zhang N, Yang G, Pan Y, Yang X, Zhao C. A review of advanced technologies and development for hyperspectral-based plant disease detection in the past three decades. Remote Sens (Basel), 2020, 12: 3188. |
[7] | Qiu R C, Yang C, Moghimi A, Zhang M, Steffenson B J, Hirsch C D. Detection of fusarium head blight in wheat using a deep neural network and color imaging. Remote Sens (Basel), 2019, 11: 2658. |
[8] | 鲍文霞, 孙庆, 胡根生, 黄林生, 梁栋, 赵健. 基于多路卷积神经网络的大田小麦赤霉病图像识别. 农业工程学报, 2020, 36(11): 174-181. |
Bao W X, Sun Q, Hu G S, Huang L S, Liang D, Zhao J. Image recognition of field wheat scab based on multi-way convolutional neural network. Trans CSAE, 2020, 36(11): 174-181. (in Chinese with English abstract) | |
[9] | 邓国强, 王君婵, 杨俊, 刘涛, 李冬双, 孙成明. 基于图像和改进U-net模型的小麦赤霉病穗识别. 麦类作物学报, 2021, 41: 1432-1440. |
Deng G Q, Wang J C, Yang J, Liu T, Li D S, Sun C M. Identification of fusarium head blight in wheat ears based on image and improved U-net model. J Triticeae Crops, 2021, 41: 1432-1440. (in Chinese with English abstract) | |
[10] |
戴雨舒, 仲晓春, 孙成明, 杨俊, 刘涛, 刘升平. 基于图像处理和Deeplabv3+模型的小麦赤霉病识别. 中国农机化学报, 2021, 42(9): 209-215.
doi: 10.13733/j.jcam.issn.2095-5553.2021.09.29 |
Dai Y S, Zhong X C, Sun C M, Yang J, Liu T, Liu S P. Identification of fusarium head blight in wheat-based on image processing and Deeplabv3+ model. J Chin Agric Mech, 2021, 42(9): 209-215. (in Chinese with English abstract) | |
[11] |
Zhang D Y, Wang Z C, Jin N, Gu C Y, Chen Y, Huang Y B. Evaluation of efficacy of fungicides for control of wheat fusarium head blight based on digital imaging. IEEE Access, 2020, 8: 109876-109890.
doi: 10.1109/Access.6287639 |
[12] |
Zhang D Y, Gu C Y, Wang Z C, Zhou X G, Li W F. Evaluating the efficacy of fungicides for wheat scab control by combined image processing technologies. Biosyst Eng, 2021, 211: 230-246.
doi: 10.1016/j.biosystemseng.2021.09.008 |
[13] | 张凝, 杨贵军, 赵春江, 张竞成, 杨小冬, 潘瑜春, 黄文江, 徐波, 李明, 朱西存, 李振海. 作物病虫害高光谱遥感进展与展望. 遥感学报, 2021, 25: 403-422. |
Zhang N, Yang G J, Zhao C J, Zhang J C, Yang X D, Pan Y C, Huang W J, Xu B, Li M, Zhu X C, Li Z H. Progress and prospects of hyperspectral remote sensing technology for crop diseases and pests. J Remote Sens, 2021, 25: 403-422. (in Chinese with English abstract) | |
[14] |
Behmann J, Steinrucken, Plumer L. Detection of early plant stress responses in hyperspectral images. ISPRS J Photogr, 2014, 93: 98-111.
doi: 10.1016/j.isprsjprs.2014.03.016 |
[15] |
Zhang J C, Huang Y B, Pu R L, Gonzalez-moreno P, Yuan L, Wu K H, Huang W J. Monitoring plant diseases and pests through remote sensing technology: a review. Comput Electron Agric, 2019, 165: 104943.
doi: 10.1016/j.compag.2019.104943 |
[16] | Xiao Y X, Dong Y Y, Huang W J, Liu L Y, Mm H Q. Wheat fusarium head blight detection using UAV-based spectral and texture features in optimal window size. Remote Sens (Basel), 2021, 13: 2437. |
[17] | Liu L Y, Dong Y Y, Huang W J, Dd X P, Ma H Q. Monitoring wheat fusarium head blight using unmanned aerial vehicle hyperspectral imagery. Remote Sens (Basel), 2020, 12: 3811. |
[18] |
Alisaac E, Behmann J, Kuska M T, Dehne H W, Mahlein A K. Hyperspectral quantification of wheat resistance to fusarium head blight: comparison of two fusarium species. Eur J Plant Pathol, 2018, 152: 869-884.
doi: 10.1007/s10658-018-1505-9 |
[19] |
Whetton R L, Hassall K L, Waine T W, Mouazen A M. Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 1: Laboratory study. Biosyst Eng, 2018, 166: 101-115.
doi: 10.1016/j.biosystemseng.2017.11.008 |
[20] |
Whetton R L, Waine T W, Mouazen A M. Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 2: On-line field measurement. Biosyst Eng, 2018, 167: 144-158.
doi: 10.1016/j.biosystemseng.2018.01.004 |
[21] |
Zelazny W R, Chrpova J, Hamouz P. Fusarium head blight detection from spectral measurements in a field phenotyping setting: a pre-registered study. Biosyst Eng, 2021, 211: 97-113.
doi: 10.1016/j.biosystemseng.2021.08.019 |
[22] |
Ma H Q, Huang W J, Jing Y S, Pignatti S, Laneve G, Dong Y Y, Ye H C, Liu L Y, Guo A T, Jiang J. Identification of fusarium head blight in winter wheat ears using continuous wavelet analysis. Sensors (Basel), 2020, 20: 2001.
doi: 10.3390/s20072001 |
[23] |
Ma H Q, Huang W J, Dong Y Y, Liu L Y, Guo A T. Using UAV-based hyperspectral imagery to detect winter wheat fusarium head blight. Remote Sens-Basel, 2021, 13: 3024.
doi: 10.3390/rs13153024 |
[24] |
Thenkabail P S, Smith R B, Depauwd E. Hyperspectral vegetation indices and their relationships with agricultural crop characteristics. Remote Sens Environ, 2000, 71: 158-182.
doi: 10.1016/S0034-4257(99)00067-X |
[25] |
Bauriegel E, Giebel A, Geyer M, Schmidt U, Herppich W B. Early detection of fusarium infection in wheat using hyper-spectral imaging. Comput Electron Agric, 2011, 75: 304-312.
doi: 10.1016/j.compag.2010.12.006 |
[26] |
Liu L Y, Dong Y Y, Huang W J, Du X P, Ma H Q. A disease index for efficiently detecting wheat fusarium head blight using Sentinel-2 multispectral imagery. IEEE Access, 2020, 8: 52181-52191.
doi: 10.1109/Access.6287639 |
[27] | Zhang D Y, Wang Q, Lin F F, Yin X, Gu C Y, Qiao H B. Development and evaluation of a new spectral disease index to detect wheat fusarium head blight using hyperspectral imaging. Sensors (Basel), 2020, 20: 2260. |
[28] | 丁文娟.基于不同尺度的冬小麦赤霉病高光谱遥感监测. 安徽大学硕士学位论文, 安徽合肥, 2019. |
Ding W J. Hyperspectral Remote Sensing Monitoring of Winter Wheat Head Blight Based on Different Scales. MS Thesis of Anhui University, Hefei, Anhui, China, 2019. (in Chinese with English abstract) | |
[29] |
Zhang N, Pan Y C, Feng H K, Zhao X Q, Yang X G, Ding C L, Yang G J. Development of fusarium head blight classification index using hyperspectral microscopy images of winter wheat spikelets. Biosyst Eng, 2019, 186: 83-99.
doi: 10.1016/j.biosystemseng.2019.06.008 |
[30] | Jin X, Jie L, Wang S, Qi H, Li S. Classifying wheat hyperspectral pixels of healthy heads and fusarium head blight disease using a deep neural network in the wild field. Remote Sens (Basel), 2018, 10: 395. |
[31] | 何晓军, 徐爱功, 李玉. 基于模糊相似性的彩色形态学图像处理方法. 计算机应用研究, 2019, 36(1): 258-263. |
He X J, Xu A G, Li Y. Color morphological image processing method based on fuzzy similarity. Appl Res Comput, 2019, 36(1): 258-263. (in Chinese with English abstract) | |
[32] |
Zhang X, Sun J, Li P, Zeng F, Wang H. Hyperspectral detection of salted sea cucumber adulteration using different spectral preprocessing techniques and SVM method. LWT-Food Sci Technol, 2021, 152: 112295.
doi: 10.1016/j.lwt.2021.112295 |
[33] | 中华人民共和国农业部. 小麦赤霉病测报技术规范, GB/T 157962011, 2011. |
Ministry of Agriculture. Rules for Monitoring and Forecast of the Wheat Head Blight (Fusarium graminearum Schw. /Gibberella zeae (Schw.) Petch), GB/T 15796-2011, 2011. (in Chinese) | |
[34] | Otsu N. A threshold selection method from gray-level histograms. IEEE Trans Syst Man CY-S, 1979, 9: 62-66. |
[35] |
Wang D Y, Fu Y Y, Yang G J, Yang X D, Liang D, Zhou C Q, Zhang N, Wu H, Zhang D Y. Combined use of FCN and Harris corner detection for counting wheat ears in field conditions. IEEE Access, 2019, 7: 178930-178941.
doi: 10.1109/Access.6287639 |
[36] | 马红强, 马时平, 许悦雷, 吕超, 辛鹏, 朱明明. 基于改进栈式稀疏去噪自编码器的图像去噪. 计算机工程与应用, 2018, 54(4): 199-204. |
Ma H Q, Ma S P, Xu Y L, Lyu C, Xin P, Zhu M M. Image denoising based on improved stacked sparse denoising auto- encoder. Comp Engr Appl, 2018, 54(4): 199-204. (in Chinese with English abstract) | |
[37] |
Bai Y, Xiong Y, Huang J, Zhou J, Zhang B. Accurate prediction of soluble solid content of apples from multiple geographical regions by combining deep learning with spectral fingerprint features. Postharvest Biol Technol, 2019, 156: 110943.
doi: 10.1016/j.postharvbio.2019.110943 |
[38] |
Ahman M, Alqarni M A, Khan A M, Hussain R, Mazzara M, Distefano S. Segmented and non-segmented stacked denoising autoencoder for hyperspectral band reduction. Optik, 2019, 180: 370-378.
doi: 10.1016/j.ijleo.2018.10.142 |
[39] | 戴晓爱, 郭守恒, 任清, 杨晓霞, 刘汉湖. 基于堆栈式稀疏自编码器的高光谱影像分类. 电子科技大学学报, 2016, 45: 382-386. |
Dai X A, Guo S H, Ren Q, Yang X X, Liu H H. Hyperspectral remote sensing image classification using the stacked sparse autoencoder. J Univ Elec Sci Technol Chin, 2016, 45: 382-386. (in Chinese with English abstract) | |
[40] |
Zhao C H, Wan X Q, Zhao G P, Cui B, Liu W, Qi B. Spectral-spatial classification of hyperspectral imagery based on stacked sparse autoencoder and random forest. Eur J Remote Sens, 2017, 50: 47-63.
doi: 10.1080/22797254.2017.1274566 |
[41] |
Wan X Q, Zhao C H. Local receptive field constrained stacked sparse autoencoder for classification of hyperspectral images. J Opt Soc Am A, 2017, 34: 1011-1020.
doi: 10.1364/JOSAA.34.001011 pmid: 29036085 |
[42] | Shao Z F, Zhang L J, Wang L. Stacked sparse autoencoder modeling using the synergy of airborne LiDAR and satellite optical and SAR data to map forest above-ground biomass. IEEE J-Stars, 2017, 10: 5569-5582. |
[43] | Zhang L J, Shao Z F, Liu J C, Cheng Q M. Deep learning based retrieval of forest aboveground biomass from combined LiDAR and Landsat 8 data. Remote Sens (Basel), 2019, 11: 1459. |
[44] | Fan Y Y, Zhang C, Liu Z Y, Qiu Z J, He Y. Cost-sensitive stacked auto-encoder models to detect striped stem borer infestation on rice based on hyperspectral imaging. Knowl-Based Syst, 2019, 168: 49-58. |
[45] |
Yang D, Yuan J H, Chang Q, Zhao H Y, Cao Y. Early determination of mildew status in storage maize kernels using hyperspectral imaging combined with the stacked sparse auto-encoder algorithm. Infrared Phys Technol, 2020, 109: 103412.
doi: 10.1016/j.infrared.2020.103412 |
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