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Acta Agron Sin ›› 2017, Vol. 43 ›› Issue (10): 1468-1479.doi: 10.3724/SP.J.1006.2017.01468

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Genome-wide Identification and Expression Analysis of SRO Genes Family in Gossypium hirsutum L.

LYU You-Jun1,2,3,YANG Wei-Jun1,ZHAO Lan-Jie2,YAO Jin-Bo2,CHEN Wei2,LI Yan2,ZHANG Yong-Shan2,*   

  1. 1 Anyang Institute of Technology, Henan Anyang 455000; 2 Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Henan Anyang 455000; 3 State Key Laboratory of Cotton Biology, Henan Anyang 455000.
  • Received:2017-01-25 Revised:2017-05-10 Online:2017-10-12 Published:2017-06-05
  • Contact: 张永山, E-mail: 13938698299@163.com, Tel: 13938698299 E-mail:781692734@qq.com
  • Supported by:

    This study was support by the Basic and Cutting-edge Research Project for the Science and Technology Agency of Henan Province (112300410019) and the Open Projects for State Key Laboratory of Cotton Biology (CB2014A10).

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Abstract:

RCD-ONE proteins family (SRO) is a kind of plant-specific proteins, which plays an important role in plants in response to different abiotic stress. In this study, 12 SRO genes were preliminary identified in Gossypium hirsutum L. standard line TM-1 by bioinformatics analysis. Multiple sequence alignment and phylogenetic tree analysis showed that these SROs contain PARP and RST domains, and could be divided into A, B, and C subfamilies. Transcriptome data analysis showed that in the whole genome of TM-1, Gh_D12G1442 advantageously expressed in the stem, Gh_D05G2064 in the sepals and stamens, Gh_A05G3788 advantage expression in stamens, Gh_A12G1318 in stamens and fiber, Gh_A12G2480, Gh_D12G2608, Gh_A05G2257, Gh_D05G2516 advantage expression in fiber; Gh_A08G1390, Gh_D08G1685, Gh_A12G2663, and Gh_D12G2054 in wider organs. In stress treatment showed that Gh_A08G1390 was obviously induced by cold and salt treatments, Gh_D12G2054, Gh_D08G1685, Gh_A12G2663 gene were induced try different stresses to a different degrees.

Key words: Upland cotton, Abiotic stress, SRO, Genomics

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