普通小麦‘Holdfast’条锈病成株抗性QTL定位

doi:10.3724/SP.J.1006.2019.91026

Abstract

Abstract:

Holdfast is an elite wheat cultivar from the United Kingdom with well durable resistance to stripe rust for many years. The aim of the present study was to identify adult-plant resistance (APR) genes to stripe rust in Holdfast and closely linked molecular markers to provide materials and methods for breeding wheat cultivars with durable resistance. A recombinant inbred lines (RIL) population, generated from the cross between Mingxian 169 (highly susceptible) and Holdfast, was planted in Zhongliang and Gangu of Gansu province, and Chengdu of Sichuan province during 2014-2015 and 2015-2016 cropping seasons for evaluating maximum disease severities (MDS) of stripe rust. The chromosomal locations of QTL were firstly determined based on the wheat 660K SNP array and bulked segregant analysis. Then kompetitive allele specific PCR (KASP) markers were developed to genotype the entire RIL population. Finally, the quantitative trait loci (QTLs) mapping of adult-plant resistance to stripe rust in the RIL population were performed, and two QTLs for APR to stripe rust were mapped on chromosomes 5AL and 7AL, respectively. The QTL on chromosome 5AL, designated QYr.gaas-5AL, was identified in all environments, including Zhongliang 2015, Chengdu 2015, Chengdu 2016, Gangu 2015, Gangu 2016, explaining phenotypic variances ranging from 6.5% to 9.3%. QYr.gaas-5AL was flanked by markers Ax-109948955 and Ax-108798241 with genetic distances of 0.5 cM and 1.1 cM, respectively. The 7AL QTL, designated QYr.gaas-7AL, was detected in two environments Gangu 2015 and Gangu 2016, explaining 6.2% and 7.3% of the phenotypic variances, respectively. QYr.gaas-7AL was mapped between markers Ax-110361069 and Ax-108759561 with genetic distances of 0.5 cM and 0.7 cM, respectively. The RILs containing the resistance allele at QYr.gaas-5AL and QYr.gaas-7AL loci were more resistant to stripe rust and had significantly lower MDS than those without the resistance alleles of QYr.gaas-5AL and QYr.gaas-7AL, indicating that QYr.gaas-5AL and QYr.gaas-7Al can effectively reduce stripe rust severities, thus may be used in wheat breeding for improvement of stripe rust resistance.

Key words: common wheat, stripe rust, adult-plant resistance, SNP markers, linkage analysis

Fang-Ping YANG,Jin-Dong LIU,Ying GUO,Ao-Lin JIA,Wei-E WEN,Kai-Xiang CHAO,Ling WU,Wei-Yun YUE,Ya-Chao DONG,Xian-Chun XIA. QTL mapping of adult-plant resistance to stripe rust in wheat variety holdfast[J].Acta Agronomica Sinica, 2019, 45(12): 1832-1840.

Figures/Tables 9

Table 1

Fig. 1

Table 2

Fig. 2

Fig. 3

Fig.4

Supplementary Table 1

Number of favorable alleles and MDS for the RILs from Mingxian 169/Holdfast population"

株系 Line	QYr.gaas-5AL QYr.gaas-5AL	QYr.gaas-7AL QYr.gaas-7AL	优异等位基因数目 No. of favorable alleles	最大严重度 MDS
HXF5-1	+	+	2	39
HXF5-2	+	-	1	63
HXF5-3	+	+	2	40
HXF5-4	-	+	1	82
HXF5-5	-	H	0	46.5
HXF5-6	+	H	1	54.5
HXF5-8	+	H	1	42.5
HXF5-10	+	-	1	46
HXF5-12	-	-	0	32.5
HXF5-13	-	-	0	75
HXF5-15	-	-	0	71.5
HXF5-17	H	+	1	47.5
HXF5-18	H	+	1	50.5
HXF5-20	+	H	1	37
HXF5-21	+	+	2	63
HXF5-22	+	-	1	42
HXF5-23	+	+	2	62
HXF5-24	+	H	1	49.5
HXF5-25	-	-	0	61
HXF5-26	-	-	0	63
HXF5-27	-	H	0	65.5
HXF5-29	-	+	1	55
HXF5-30	+	+	2	73.5
HXF5-32	-	-	0	69
HXF5-34	-	-	0	62
HXF5-36	+	-	1	60
HXF5-38	+	-	1	46.5
HXF5-39	-	H	0	73
HXF5-40	+	-	1	66.5
HXF5-41	-	H	0	54
HXF5-43	+	H	1	61
HXF5-44	+	-	1	51
HXF5-45	+	-	1	59
HXF5-46	-	+	1	51
HXF5-47	-	+	1	57
HXF5-48	-	+	1	56.5
HXF5-49	+	+	2	47.5
HXF5-50	-	+	1	70
HXF5-52	-	H	0	69
HXF5-53	H	+	1	35.5
HXF5-54	-	-	0	38
HXF5-57	-	H	0	52.5
HXF5-58	-	+	1	34.4
HXF5-60	-	-	0	67.5
HXF5-62	+	-	1	68
HXF5-63	-	-	0	75.5
HXF5-64	+	-	1	59.5
HXF5-65	-	-	0	76.5
HXF5-67	+	-	1	67.5
HXF5-68	+	-	1	58
HXF5-69	-	-	0	72.5
HXF5-71	-	+	1	67.5
HXF5-73	-	H	0	66.5
HXF5-74	-	H	0	59
HXF5-76	-	-	0	63.5
HXF5-77	+	-	1	63
HXF5-78	+	H	1	64.5
HXF5-79	H	-	0	79.5
HXF5-81	+	-	1	64
HXF5-82	+	+	2	35
HXF5-83	H	-	0	72
HXF5-84	+	-	1	56.5
HXF5-85	+	H	1	63.5
HXF5-86	+	-	1	55
HXF5-87	-	+	1	65.5
HXF5-88	-	+	1	87.5
HXF5-89	+	+	2	56.5
HXF5-90	+	+	2	49
HXF5-94	+	-	1	37
HXF5-98	-	+	1	63
HXF5-99	-	-	0	62
HXF5-100	H	-	0	63.5
HXF5-101	-	+	1	77
HXF5-102	-	H	0	66
HXF5-103	-	H	0	58
HXF5-104	-	+	1	59.5
HXF5-106	+	+	2	60.5
HXF5-107	-	-	0	72.5
HXF5-108	+	H	1	71
HXF5-109	+	+	2	53.5
HXF5-110	+	+	2	75
HXF5-111	+	+	2	54
HXF5-114	-	+	1	87
HXF5-115	-	+	1	77
HXF5-119	+	-	1	34.5
HXF5-120	-	+	1	55
HXF5-121	-	H	0	55
HXF5-124	+	+	2	56.5
HXF5-125	H	H	0	48.5
HXF5-126	+	+	2	56.5
HXF5-127	+	+	2	47
HXF5-128	+	-	1	60.5
HXF5-130	-	-	0	65
HXF5-131	-	-	0	75
HXF5-132	+	+	2	65
HXF5-135	-	-	0	77
HXF5-136	-	-	0	72
HXF5-138	-	-	0	48
HXF5-141	-	+	1	69
HXF5-142	+	+	2	58
HXF5-143	-	-	0	53
HXF5-144	+	-	1	46
HXF5-145	-	-	0	70.5
HXF5-147	-	+	1	65
HXF5-150	H	-	0	48
HXF5-151	+	-	1	54.5
HXF5-152	-	+	1	62.5
HXF5-153	+	-	1	69
HXF5-156	+	+	2	61.5
HXF5-157	-	-	0	52.3
HXF5-158	-	+	1	78.5
HXF5-159	-	-	0	61
HXF5-160	-	-	0	82
HXF5-161	-	+	1	73.5
HXF5-162	-	+	1	65.5
HXF5-163	H	-	0	50.5
HXF5-164	H	-	0	64
HXF5-165	-	-	0	69
HXF5-166	+	-	1	54
HXF5-167	-	+	1	60.5
HXF5-168	+	+	2	51.7
HXF5-171	-	-	0	70.5
HXF5-173	-	-	0	72.5
HXF5-174	-	-	0	69.5
HXF5-175	+	-	1	58.5
HXF5-176	-	+	1	70
HXF5-177	-	-	0	72
HXF5-178	+	-	1	80
HXF5-179	+	+	2	48.5
HXF5-180	H	+	1	75.5
HXF5-181	+	-	1	56.5
HXF5-182	-	-	0	41.5
HXF5-183	+	+	2	46
HXF5-184	+	-	1	57
HXF5-185	+	+	2	61.5
HXF5-186	-	+	1	70.5
HXF5-187	+	+	2	59
HXF5-189	-	-	0	69
HXF5-191	+	-	1	57
HXF5-192	+	+	2	36.5
HXF5-193	-	-	0	52.5
HXF5-194	+	+	2	75.5
HXF5-195	-	+	1	59
HXF5-196	+	-	1	47.5
HXF5-200	-	-	0	66.5
HXF5-201	+	-	1	33
HXF5-201	+	+	2	31
HXF5-202	-	-	0	64
HXF5-204	+	-	1	53
HXF5-208	+	-	1	72
HXF5-210	-	-	0	70.5
HXF5-211	+	-	1	70
HXF5-212	+	-	1	88.5
HXF5-212	-	-	0	88.5
HXF5-212	-	+	1	88.5
HXF5-213	-	-	0	79
HXF5-214	+	+	2	81
HXF5-216	-	-	0	78.5
HXF5-218	-	-	0	132
HXF5-220	H	+	1	54.5
HXF5-221	+	-	1	59
HXF5-222	-	-	0	69.5
HXF5-223	-	-	0	78.5
HXF5-224	+	+	2	45
HXF5-227	H	-	0	68
HXF5-228	-	-	0	66
HXF5-229	-	+	1	43
HXF5-230	+	-	1	54
HXF5-231	+	-	1	29.6
HXF5-232	H	+	1	73
HXF5-234	-	-	0	63
HXF5-235	+	+	2	51
HXF5-236	-	-	0	65
HXF5-238	+	+	2	50
HXF5-239	-	-	0	54
HXF5-240	+	+	2	57
HXF5-241	-	-	0	65
HXF5-242	+	-	1	56
HXF5-243	-	-	0	77
HXF5-244	-	-	0	79
HXF5-245	+	-	1	76.5
HXF5-246	+	-	1	62.5
HXF5-247	-	+	1	55
HXF5-248	-	-	0	69.5
HXF5-249	+	+	2	57
HXF5-250	-	-	0	60.5
HXF5-251	+	+	2	43.5
HXF5-252	+	-	1	44
HXF5-253	+	+	2	66
HXF5-254	-	-	0	68.5
HXF5-255	-	-	0	68
HXF5-256	-	-	0	64
HXF5-257	+	+	2	61
HXF5-258	H	-	0	63
HXF5-260	-	-	0	52.5
HXF5-261	-	-	0	72.5
HXF5-262	-	-	0	70.5
HXF5-263	-	+	1	63.5
HXF5-264	+	+	2	55
HXF5-267	-	+	1	63.5
HXF5-268	-	-	0	83.5
HXF5-271	-	-	0	55
HXF5-273	+	+	2	49.5
HXF5-274	+	+	2	42.5
HXF5-275	-	+	1	66
HXF5-276	+	+	2	62
HXF5-277	+	-	1	65
HXF5-278	+	-	1	64
HXF5-279	-	-	0	63
HXF5-283	-	+	1	79
HXF5-284	-	-	0	71
HXF5-285	H	-	0	78
HXF5-286	+	+	2	50
HXF5-287	-	-	0	59.5
HXF5-288	+	+	2	66
HXF5-289	-	-	0	71.5
HXF5-290	+	-	1	55.5
HXF5-291	+	-	1	49.5
HXF5-292	+	-	1	80.5
HXF5-293	-	+	1	66.5
HXF5-294	+	-	1	69
HXF5-295	+	-	1	68.5
HXF5-296	+	-	1	69.5
HXF5-297	-	-	0	80.5
HXF5-299	-	-	0	73
HXF5-301	-	-	0	60.5
HXF5-302	-	-	0	53.5
HXF5-303	H	-	0	70.5
HXF5-304	+	+	2	57
HXF5-305	-	-	0	52.5
HXF5-306	+	-	1	60
HXF5-307	+	-	1	72
HXF5-308	-	+	1	63.5
HXF5-309	-	-	0	59.5
HXF5-310	+	-	1	59.5
HXF5-312	-	+	1	59
HXF5-313	-	-	0	68
HXF5-315	-	-	0	35
HXF5-316	+	-	1	64
HXF5-317	-	-	0	71
HXF5-319	+	+	2	44.5
HXF5-320	-	+	1	62
HXF5-321	-	-	0	80.5
HXF5-322	-	-	0	88
HXF5-323	-	+	1	49
HXF5-324	+	+	2	58
HXF5-325	-	+	1	82.5
HXF5-326	-	-	0	66
HXF5-327	-	-	0	67
HXF5-328	-	+	1	75
HXF5-329	-	-	0	66.5
HXF5-330	+	-	1	66.5
HXF5-331	+	-	1	68
HXF5-332	-	-	0	66.5
HXF5-333	-	-	0	67.5
HXF5-334	-	-	0	77.5
HXF5-335	-	+	1	84.5
HXF5-336	+	-	1	62.5
HXF5-337	-	-	0	57.5
HXF5-338	+	-	1	54.5
HXF5-340	+	-	1	66.5
HXF5-341	-	-	0	63
HXF5-342	-	-	0	66.5
HXF5-343	-	-	0	56
HXF5-344	-	-	0	54.5
HXF5-346	+	-	1	74.5
HXF5-347	+	-	1	62.5
HXF5-349	-	-	0	80.5
HXF5-350	+	-	1	68.5
HXF5-351	-	-	0	53.5
HXF5-352	-	+	1	59.5
HXF5-353	-	-	0	56.5
HXF5-354	+	-	1	47
HXF5-355	-	-	0	67.5
HXF5-356	-	-	0	57.5
HXF5-357	+	-	1	52
HXF5-358	-	+	1	38.5
HXF5-359	-	-	0	56
HXF5-361	+	+	2	69
HXF5-362	+	-	1	66
HXF5-363	+	-	1	64
HXF5-364	+	+	2	55
HXF5-365	-	-	0	61
HXF5-366	-	-	0	73.5
HXF5-367	-	-	0	74.5
HXF5-370	+	+	2	45
HXF5-371	+	-	1	78.5
HXF5-886	+	-	1	69

Supplementary Table 1

Supplementary Fig. 1

Supplementary Fig. 2

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环境 Environment	中梁2015 Zhongliang 2015	成都2015 Chengdu 2015	甘谷2015 Gangu 2015	成都2016 Chengdu 2016
成都2015 Chengdu 2015	0.40^**
甘谷2015 Gangu 2015	0.29^*	0.12
成都2016 Chengdu 2016	0.42^**	0.56^**	0.15
甘谷2016 Gangu 2016	0.56^**	0.47^**	0.27^*	0.56^**

变异来源 Source of variation	自由度 df	均方 MS	F值 F-value
重复Replicate	2	7670	28.4^**
环境 Environment (E)	4	46189	170.9^**
基因型 Genotype (G)	287	1558	5.8^**
基因型×环境 G×E	1148	459	1.7^**
误差 Error	1435	270

QTL mapping of adult-plant resistance to stripe rust in wheat variety holdfast

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