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Acta Agronomica Sinica ›› 2021, Vol. 47 ›› Issue (7): 1309-1323.doi: 10.3724/SP.J.1006.2021.01061

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles     Next Articles

Identification of resistance to wheat and molecular detection of resistance genes to wheat stripe rust of 78 wheat cultivars (lines) in Sichuan province

XI Ling1,2, WANG Yu-Qi1,2, ZHU Wei1,2, WANG Yi1,2, CHEN Guo-Yue1,2, PU Zong-Jun3, ZHOU Yong-Hong1,2, KANG Hou-Yang1,2,*()   

  1. 1Triticeae Research Institute, Sichuan Agricultural University, Chengdu 611130, Sichuan, China
    2State Key Laboratory of Crop Gene Exploitation and Utilization in Southwest China, Chengdu 611130, Sichuan, China
    3Crop Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu 610066, Sichuan, China
  • Received:2020-08-02 Accepted:2020-11-13 Online:2021-07-12 Published:2020-12-22
  • Contact: KANG Hou-Yang E-mail:houyang.kang@sicau.edu.cn
  • Supported by:
    This study was supported by the National Key Research and Development Program of China(2017YFD0100900);the Science and Technology Bureau of Sichuan Province(2020YJ0348)

Abstract:

Sichuan province is one of the main origins of new races of the wheat stripe rust pathogen. To understand the resistance level of wheat cultivars (lines) bred in Sichuan since 2016 to the current predominant races of the pathogen and pathotypes and to clarify the distribution of resistance genes can provide a theoretical basis for the management of wheat stripe rust by breeding resistance wheat cultivars and wheat variety deployment in Sichuan. In this study, 78 Sichuan wheat cultivars (lines) were identified at seedling stage by two races CYR32 and CYR34. At adult plant stage in wheat, the mixture of the current predominant races of CYR32, CYR33, CYR34, G22-14, and G22 pathogenic groups virulent to wheat cultivar Guinong 22 were artificially inoculated to assess the resistance of the tested wheat. Nineteen resistance genes and QTLs, including QYr.nwafu-4BL, Yr5, Yr10, Yr15, Yr17, Yr18, Yr26, Yr28, Yr29, Yr30, Yr36, Yr39, Yr41, Yr48, Yr65, Yr67, Yr78, Yr80, and Yr81, were detected the presence of the resistance genes in all tested materials. The results showed that 60 (76.92%) of the 78 tested materials were resistant to CYR32, 40 (51.28%) resistant to CYR34, and 36 (46.15%) resistant to both races at seedling stage. Seventy-eight wheat materials were resistant to wheat stripe rust at adult stage, 4 out of which, including Mianmai 835, Shumai 1743, Shumai 1829, and Shumai 1868, were immune to the disease. Disease resistance identification showed that 42 (53.85%) exhibited adult plant resistance and 36 (46.15%) were all stage resistant to wheat stripe rust. Molecular detection indicated that 5, 5, 45, 2, 30, 5, 30, 39, 3, 2, 22, 8, 23, 6, and 24 carried the resistance gene QYr.nwafu-4BL, Yr15, Yr17, Yr18, Yr26, Yr28, Yr29, Yr30, Yr39, Yr41, Yr65, Yr67, Yr78, Yr80, and Yr81, respectively. Two to six resistance genes were detected in 24, 22, 11, 14, and 3 of the tested wheat materials, accounting for 94.87%. Yr5, Yr10, Yr36, and Yr48 were not detected in all wheat cultivars (lines), and only Xikemai 18, not detected any of the 19 resistance genes mentioned above, presumably, may carried other known or new resistance genes to wheat stripe rust. In summary, that resistance level of 78 wheat cultivars (lines) to wheat stripe rust was identified, and the resistance genes of these cultivars were identified. These results provide scientific basis for breeding durable resistant wheat cultivar.

Key words: stripe rust of wheat, wheat cultivars (lines), resistance evaluation, molecular detection

Table 1

Molecular markers and primer sequences of wheat stripe rust resistance genes"

Yr基因
Yr gene
类别a
Type a
分子标记
Molecular marker
引物序列
Primer sequence (5′?3′)
参考文献
Reference
QYr.nwafu-4BL KASP AX-110963704 GAAGGTGACCAAGTTCATGCTTCGTTTGCCTATGGTTCAAAAC [31]
GAAGGTCGGAGTCAACGGATTTCGTTTGCCTATGGTTCAAAAG
TCTCCATGACACGGGAGGAT
Yr5 DM Yr5_B GGGAACACTTCACGATCA [32]
AATTCCTTCATGCCTTCC
DM Yr5_A CGCTTAATTCCCCTTCCTTC [32]
TGGCTCCTTATTCGTTCTCTTTC
KASP Yr5F GAAGGTGACCAAGTTCATGCTGCGCCCCTTTTCGAAAAAATA [32]
Yr5H GAAGGTCGGAGTCAACGGATTCTAGCATCAAACAAGCTAAATA
Yr5R ATGTCGAAATATTGCATAACATGG
Yr10 AFLP SC200 CTGCAGAGTGACATCATACA [33]
TCGAACTAGTAGATGCTGGC
DM Yr10-5 GGAAATGTGGCGGAGTACCA [34]
CGGAAGGGAGAACCACTGTC
DM Yr10-6 CAGCTTGACAAGGGCGAGTA [34]
CGCTTGTCGCCAATTCCAAA
Yr15 DM Y15K1_F2 GGAGATAGAGCACATTACAGAC [35]
uhw301R GGAGATAGAGCACATTACAGAC
DM WJL2F CCTTGTGTGCTACCAGGGTT [36]
WJL2R GGAACTCAAGCCCTTCTGCT
DM WJL3F AAAAGAGCTCGCCTCCTACG [37]
WJL3R GCCATGATGAGATCGGGAGG
Yr17 SCAR SC2372 AGGGGCTACTGACCAAGGCT [38]
TGCAGCTACAGCAGTATGTACACAAAA
Yr18 STS csLV34 GTTGGTTAAGACTGGTGATGG [39]
TGCTTGCTATTGCTGAATAGT
Cssfr1 L34DINT9F TTGATGAAACCAGTTTTTTTTCTA [39]
L34PLUSR GCCATTTAACATAATCATGATGGA
KASP Lr34-KASP-E11 GAAGGTGACCAAGTTCATGCTGGGAGCATTATTTTTTTCCATCA [40]
GAAGGTCGGAGTCAACGGATTGGGAGCATTATTTTTTTCCATCT
AGCGAATCCAGTATGGAAAT
Yr26 STS Xwe173 GGGACAAGGGGAGTTGAAGC [41]
GAGAGTTCCAAGCAGAACAC
STS Xwe33 TAAACCAAGTCCCCCAAA [41]
GGAGTCCATCTTCACCGA
Yr28 InDel ZCZp343F TGTGTCATGTTTGGTCGATAGG [42]
ZCZp342R TCCTCCCTTGTAGCTTCACG

"

Yr基因
Yr gene
类别a
Type a
分子标记
Molecular marker
引物序列
Primer sequence (5′?3′)
参考文献
Reference
Yr28 DM P175 GCACCGTCCTTCATCTCAGT [42]
P176 TGCTTTTCCCCGTATCCCTT
Yr29 CAPS csLV46 CGAGACGTCGTCTTCTCTAAC [43]
GTGTATGTGTTGATTCTCCTCG
Yr30 SSR Xgwm533 GTTGCTTTAGGGGAAAAGCC [44]
AAGGCGAATCAAACGGAATA
Yr36 DM WKS1_150F ATGGAGCTCCCACGAAACAAAC [45]
WKS1_620R ACCTCCATGTTGCTCGCATTTGCT
DM WKS1_182F TAGCTCTTCGTGGCCAAAGG [45]
WKS1_150R TGGCCACGAAGAGCTAAAGG
Yr39 SSR Xgwm131 AATCCCCACCGATTCTTCTC [46]
AGTTCGTGGGTCTCTGATGG
Yr41 SSR Xgwm410 GCTTGAGACCGGCACAGT [47]
CGAGACCTTGAGGGTCTAGA
SSR Xgwm374 ATAGTGTGTTGCATGCTGTGTG [47]
TCTAATTAGCGTTGGCTGCC
Yr48 SSR Xwmc727 CATAATCAGGACAGCCGCAC [48]
TAGTGGCCTGATGTATCTAGTTGG
SSR Xwms291 CATCCCTACGCCACTCTGC [48]
AATGGTATCTATTCCGACCCG
Yr65 SSR Xgwm18 GGTTGCTGAAGAACCTTATTTAGG [49]
TGGCGCCATGATTGCATTATCTTC
Yr67 SSR Xbarc182 CCATGGCCAACAGCTCAAGGTCTC [50]
CGCAAAACCGCATCAGGGAAGCACCAAT
SSR Xcfa2040 TCAAATGATTTCAGGTAACCACTA [50]
TTCCTGATCCCACCAAACAT
Yr78 KASP IWA7257 GAAGGTGACCAAGTTCATGCTAGACCCTACGACGTTAGCGC [51]
GAAGGTCGGAGTCAACGGATTAGACCCTACGACGTTAGCGA
ATTGGAATCAGCTGGGTCAT
Yr80 KASP KASP_53113 GAAGGTGACCAAGTTCATGCTTGTACAATGACTCCTCGACTAACA [52]
GAAGGTCGGAGTCAACGGATTTGTACAATGACTCCTCGACTAACG
GCCACGCAATATCACCATCG
Yr81 KASP KASP_3077 GAAGGTGACCAAGTTCATGCTATTCCAAAGTAATTGGCAACAGGTTCA [53]
GAAGGTCGGAGTCAACGGATTCCAAAGTAATTGGCAACAGGTTCG
TGTGGAGCGTGACAATGAGGAAGTT

Fig. 1

Agarose gel result of Yr15 gene by molecular marker Y15K1_F2/uhw301R in the part of Sichuan wheat cultivars (lines) M: molecular weight marker (1 kb); 1: Yr15/6*AvS; 2: Avocet S; 3: Mianmai 835; 4: Xikemai 557; 5: Shumai 1829; 6: Shumai 1868; 7: Chuanmai 1747; 8: Fan 37123; 9: 31966; 10: Mianmai 161; 11: Mianmai 827; 12: Mianmai 906; 13: Xikemai 12; 14: Chuannong 27; 15: Chuannong 41; 16: Shumai 1613; 17: Shumai 1821; 18: Shumai 1871; 19: Chuanmai 607; 20: Chuanmai 611; 21: Chuanmai 802; 22: Chuanmai 803."

Table 2

Evaluation of wheat resistance to stripe rust and detection of Yr genes in 78 Sichuan wheat cultivars (lines)"

序号
Number
品种
Variety
苗期反应型
Infection type in
seedling stage
成株期2019WJ a
2019WJ a in
adult-plant stage
抗性类型b
Resistance
type b
Yr基因
Yr gene
CYR32 CYR34 IT DS
1 凡37123 Fan 37123 5 7 1 0 APR Yr17+Yr81
2 31966 1 7 1 0 APR Yr17+Yr81
3 绵麦161 Mianmai 161 5 5 1 0 ASR Yr17+Yr26
4 绵麦319 Mianmai 319 5 5 2 5 ASR QYr.nwafu-4BL+Yr17+Yr26+Yr65
5 绵麦827 Mianmai 827 5 5 2 5 ASR Yr26+Yr30+Yr65+Yr78+Yr81
6 绵麦835 Mianmai 835 4 5 0 0 ASR Yr15
7 绵麦902 Mianmai 902 6 6 3 5 ASR Yr17+Yr78+Yr81
8 绵麦903 Mianmai 903 5 5 2 5 ASR Yr17+Yr29+Yr30+Yr78+Yr80
9 绵麦905 Mianmai 905 6 0 1 0 ASR Yr17+Yr28
10 绵麦906 Mianmai 906 2 6 1 0 ASR QYr.nwafu-4BL+Yr17+Yr26+Yr39+Yr80
11 绵麦1419 Mianmai 1419 5 7 1 0 APR Yr26+Yr30+Yr67+Yr78
12 绵麦1501 Mianmai 1501 5 7 3 10 APR Yr17+Yr26+Yr29+Yr78+Yr81
13 绵麦5658 Mianmai 5658 1 7 1 0 APR Yr17+Yr26+Yr30+Yr78+Yr80
14 绵麦5695 Mianmai 5695 1 4 2 5 ASR Yr26+Yr78+Yr81
15 西科麦11 Xikemai 11 5 7 1 0 APR Yr17+Yr26+Yr81
16 西科麦12 Xikemai 12 5 7 1 0 APR Yr29+Yr30
17 西科麦18 Xikemai 18 5 7 1 0 APR
18 西科麦475 Xikemai 475 7 5 2 5 APR Yr17+Yr26+Yr29+Yr30+Yr81
19 西科麦497 Xikemai 497 5 4 2 5 ASR Yr29+Yr78
20 西科麦518 Xikemai 518 7 7 1 0 APR Yr17+Yr29+Yr67
21 西科麦546 Xikemai 546 7 7 2 5 APR Yr17+Yr29+Yr78
22 西科麦557 Xikemai 557 6 0 2 5 ASR Yr15+Yr29
23 川农27 Chuannong 27 7 7 2 5 APR Yr17+Yr39+Yr81
24 川农30 Chuannong 30 5 5 2 5 ASR Yr17+Yr80
25 川农32 Chuannong 32 7 1 2 5 APR Yr17+Yr39+Yr80+Yr81
26 川农38 Chuannong 38 5 7 1 0 APR Yr17+Yr81
27 川农39 Chuannong 39 5 7 1 0 APR Yr17+Yr30+Yr67
28 川农41 Chuannong 41 5 7 1 0 APR Yr17+Yr81
29 川农42 Chuannong 42 7 7 1 0 APR Yr17+Yr81
30 蜀麦691 Shumai 691 8 7 2 5 APR Yr17+Yr29+Yr30+Yr67+Yr81
31 蜀麦1613 Shumai 1613 3 0 3 5 ASR Yr17+Yr29+Yr67
32 蜀麦1671 Shumai 1671 5 7 2 5 APR Yr26+Yr30+Yr65+Yr78
33 蜀麦1675 Shumai 1675 5 7 1 0 APR Yr28+Yr29+Yr30+Yr81
34 蜀麦1743 Shumai 1743 5 5 0 0 ASR Yr17+Yr29
35 蜀麦1783 Shumai 1783 5 1 3 5 ASR Yr17+Yr29+Yr67
36 蜀麦1812 Shumai 1812 7 7 2 5 APR Yr17+Yr81
37 蜀麦1820 Shumai 1820 7 8 4 10 APR Yr17+Yr29+Yr78
38 蜀麦1821 Shumai 1821 7 7 1 0 APR Yr26+Yr30+Yr78
39 蜀麦1829 Shumai 1829 0 1 0 0 ASR Yr15+Yr17
40 蜀麦1843 Shumai 1843 7 6 1 0 APR QYr.nwafu-4BL+Yr17+Yr29
41 蜀麦1862 Shumai 1862 7 7 1 0 APR Yr26+Yr30+Yr65+Yr78
42 蜀麦1868 Shumai 1868 2 0 0 0 ASR Yr15+Yr17+Yr30+Yr41+Yr78
43 蜀麦1871 Shumai 1871 5 5 1 0 ASR Yr17+Yr29+Yr30+Yr67+Yr81
44 蜀麦1885 Shumai 1885 6 5 3 10 ASR Yr17+Yr29+Yr67
45 川麦83 Chuanmai 83 5 0 2 5 ASR Yr17+Yr29
46 川麦84 Chuanmai 84 5 7 2 5 APR QYr.nwafu-4BL+Yr30+Yr65+Yr78
47 川麦86 Chuanmai 86 5 7 1 0 APR Yr26+Yr29+Yr30+Yr78
48 川麦87 Chuanmai 87 7 7 2 5 APR Yr17+Yr30+Yr80+Yr81
49 川麦88 Chuanmai 88 7 7 2 5 APR Yr30
50 川麦93 Chuanmai 93 6 7 3 5 APR Yr26+Yr28+Yr29+Yr30+Yr65+Yr81
51 川麦98 Chuanmai 98 5 5 1 0 ASR Yr17+Yr28+Yr29+Yr81
52 川麦603 Chuanmai 603 4 7 1 0 APR Yr26+Yr29+Yr78
53 川麦604 Chuanmai 604 5 7 1 0 APR Yr17+Yr26+Yr30+Yr65
54 川麦605 Chuanmai 605 0 1 2 5 ASR QYr.nwafu-4BL+Yr26+Yr29+Yr30+Yr65
55 川麦606 Chuanmai 606 5 7 1 0 APR Yr30+Yr78
56 川麦607 Chuanmai 607 7 7 1 0 APR Yr17+Yr26+Yr78
57 川麦608 Chuanmai 608 5 5 1 0 ASR Yr17+Yr26+Yr29+Yr65+Yr78
58 川麦609 Chuanmai 609 5 7 1 0 APR Yr17+Yr26+Yr29+Yr65+Yr78
59 川麦610 Chuanmai 610 1 4 1 0 ASR Yr30+Yr65
60 川麦611 Chuanmai 611 5 0 1 0 ASR Yr29
61 川麦613 Chuanmai 613 2 7 1 5 APR Yr17+Yr29+Yr81
62 川麦801 Chuanmai 801 5 7 1 0 APR Yr17+Yr18+Yr26+Yr30+Yr65+Yr81
63 川麦802 Chuanmai 802 5 5 1 0 ASR Yr17+Yr30+Yr81
64 川麦803 Chuanmai 803 5 7 1 5 APR Yr17+Yr26+Yr30+Yr65+Yr78
65 川麦901 Chuanmai 901 7 7 2 5 APR Yr29+Yr65
66 川麦905 Chuanmai 905 4 5 3 5 ASR Yr26+Yr30+Yr65
67 川麦906 Chuanmai 906 5 5 2 5 ASR Yr26+Yr28+Yr29+Yr30+Yr65+Yr81
68 川麦907 Chuanmai 907 5 5 1 0 ASR Yr30+Yr65
69 川麦1456 Chuanmai 1456 6 5 2 5 ASR Yr18+Yr26+Yr30+Yr41+Yr78
70 川麦1546 Chuanmai 1546 5 5 4 10 ASR Yr30+Yr65
71 川麦1557 Chuanmai 1557 7 7 2 5 APR Yr30+Yr65
72 川麦1580 Chuanmai 1580 5 5 1 0 ASR Yr30+Yr65
73 川麦1603 Chuanmai 1603 5 5 1 0 ASR Yr30+Yr65
74 川麦1648 Chuanmai 1648 5 5 1 0 ASR Yr17+Yr26+Yr30
75 川麦1650 Chuanmai 1650 5 7 1 0 APR Yr17+Yr26+Yr30
76 川麦1694 Chuanmai 1694 7 5 1 0 APR Yr26+Yr30
77 川麦1699 Chuanmai 1699 5 5 2 5 ASR Yr26+Yr30+Yr65
78 川麦1747 Chuanmai 1747 0 0 1 0 ASR Yr15+Yr29+Yr30

Fig. 2

Molecular detection of Yr30 using marker Xgwm533 in the part of Sichuan wheat cultivars (lines) M: molecular weight marker (35-5000 bp); 1: Opata 85 (Yr30); 2: Avocet S; 3: Mianmai 827; 4: Mianmai 1419; 5: Xikemai 12; 6: Xikemai 475; 7: Chuannong 39; 8: Shumai 1671; 9: Shumai 1675; 10: Shumai 1871; 11: Chuanmai 86; 12: Chuanmai 87; 13: Chuanmai 802; 14: Chuanmai 905; 15: Chuanmai 906."

Fig. 3

Detection of Yr80 based on real-time PCR using molecular marker KASP_53113 in the part of Sichuan wheat cultivars (lines) Yellow: wheat cultivars carrying Yr80, Mianmai 903, Mianmai 906, Mianmai 5658, Chuannong 30, Chuannong 32, and Chuanmai 87. Blue: wheat cultivars without carrying Yr80, Mianmai 319, Mianmai 835, Xikemai 12, Xikemai 518, Shumai 1675, and Chuanmai 605. Green: Yr multigenic wheat cultivars (lines), Mianmai 1501, Shumai 1871, and Chuanmai 906. Black: H2O as blank control."

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