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Acta Agron Sin ›› 2015, Vol. 41 ›› Issue (10): 1500-1509.doi: 10.3724/SP.J.1006.2015.01500

• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles     Next Articles

Genome-Wide Association Analysis between SNP Markers and Plant Height Related Traits in Wheat

CHEN Guang-Feng1,2,CHEN Jian-Sheng1,TIAN Ji-Chun1,*   

  1. 1State Key Laboratory of Crop Biology / Shandong Provincial Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China; 2College of Ecology and Garden Architecture, Dezhou University, Dezhou 253023, China
  • Received:2014-10-23 Revised:2015-04-06 Online:2015-10-12 Published:2015-07-09
  • Contact: 田纪春, Tel: 0538-8242040, E-mail: jctian@sdau.edu.cn E-mail:wywdz@sina.cn

Abstract:

Plant height (PH) has great influence to yield potential and lodging occurrence in wheat (Triticum aestivum L.). In this study, the diverse panel of 205 elite wheat lines was genotyped with the 90k SNP array (24 355 SNPs) based on the Illumina Infinium assay to disclose the PH genetic mechanism. A total of 38 SNPs were found to be associated with PH (P < 0.0001), which were located on chromosomes 1B, 2A, 2B, 3A, 3B, 3D, 4A, 4B, 5A, and 6D, including 11 SNPs detected in two or more environments. These stable SNPs can be used to develop CAPS markers for PH. In addition, a few elite alleles were identified, such as BobWhite_c48009_52 to reduce PH by 12.9 cm, and BS00039422_51-C and IAAV1698-A to decrease length of the first internode below spike by 5.9 cm and 6.6 cm, respectively. These results will facilitate further researches in PH-related traits in wheat.

Key words: Wheat, SNP marker, Plant height, Genome-wide association analysis

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