[1]ZederMA,EmshwillerE,SmithBD,BradlyDG.Identifyingcropdomestictiongenes.TrendsGenet,2006,22:139–155
[2]Ross-IbarraJ,MorrellPL,GautBS.Plantdomestication,auniqueopportunitytoidentifythegeneticbasisofadaptation.ProcNatlAcadSciUSA,2007,104:8641–8648
[3]PuruggananMD,FullerDQ.Thenatureofselectionduringplantdomestication.Nature,2009,457:843–848
[4]IzawaT,KonishiS,ShomuraA,YanoM.DNAchangestellusaboutricedomestication.CurrOpinPlantBiol,2009,12:185–192
[5]GeHM,YouGX,WangLF,HaoCY,DongYS,LiZS,ZhangXY.Genomeselectionsweepandassociationanalysisshedlightonfuturebreedingbydesigninwheat.CropSci,2002,52:1218–1228
[6LinT,ZhuGT,ZhangJH,XuXY,YuQH,ZhengZ,ZhangZH,LunYY,LiS,WangXX,HuangZJ,LiJM,ZhangCZ,WangTT,ZhangYY,WangAX,ZhangYC,LinK,LiCY,XiongGS,XueYB,MazzucatoA,CausseM,FeiZJ,GiovannoniJJ,ChetelatRT,ZamirD,StadlerT,LiJF,YeZB,DuYC,HuangSW.Genomicanalysesprovideinsightsintothehistoryoftomatobreeding.NatGenet,2014,46:1220–1226
[7]ZhouDG,ChenW,LinZC,ChenHD,WangCR,LiH,YuRB,ZhangFY,ZhenG,YiJL,LiKH,LiuYG,TerzaghiW,TangXY,HeH,ZhouSC,DengXW.Pedigree-basedanalysisofderivationofgenomesegmentsofanelitericerevealskeyregionsduringitsbreeding.PlantBiotechnolJ,2016,14:638–648
[8]DoebleyJF,GautBS,SmithBD.Themoleculargeneticsofcropdomestication.Cell,2006,127:1309–1321
[9]MeyerRS,PuruggananMD.Evolutionofcropspecies:geneticsofdomesticationanddiversification.NatRevGenet,2013,14:840–852
[10]ZhangXY,TongYP,YouGX,HaoCY,GeHM,WangLF,LiB,DongYS,LiZS.Hitchhikingeffectmapping:anewapproachfordiscoveringagronomicimportantgenes.AgricSciChina,2007,6:255–264
[11]OlsenKM,WendelJF.Abountifulharvest:Genomicinsightsintocropdomesticationphenotypes.AnnuRevPlantBiol,2013,64(4):47–70
[12]JinJ,HuangW,GaoJP,YangJ,ShiM,ZhuMZ,LuoD,LinHX.Geneticcontrolofriceplantarchitectureunderdomestication.NatGenet,2008,40:1365–1369
[13]TanLB,LiXR,LiuFX,SunXY,LiCG,ZhuZF,FuYC,CaiHW,WangXK,XieDX,SunCQ.Controlofakeytransitionfromprostratetoerectgrowthinricedomestication.NatGenet,2008,40:1360–1364[14]XieWB,WangGW,YuanM,YaoW,LyuK,ZhaoH,YangM,LiPB,ZhangX,YuanJ,WangQX,LiuF,DongHX,ZhangLJ,LiXL,MengXZ,ZhangW,XiongLZ,HeYQ,WangSP,YuSB,XuCG,LuoJ,LiXH,XiaoJH,LianXM,ZhangQF.Breedingsignaturesofriceimprovementrevealedbyagenomicvariationmapfromalargegermplasmcollection.ProcNatlAcadSciUSA,2015,112:5411–5419
[15]HouJ,JiangQY,HaoCY,WangYQ,ZhangHN,ZhangXY.Globalselectiononsucrosesynthasehaplotypesduringacenturyofwheatbreeding.PlantPhysiol,2014,164:1918–1929
[16]ShangY,MaYS,ZhouY,ZhangHM,DuanLX,ChenHM,ZengJG,ZhouQ,WangSH,GuWJ,LiuM,RenJW,GuXF,ZhangSP,WangY,YasukawaK,BouwmeesterHJ,QiXQ,ZhangZH,LucasWJ,HuangSW.Biosynthesis,regulation,anddomesticationofbitternessincucumber.Science,2014,346:1084–1088
[17]KonishiS,IzawaT,LinSY,EbanaK,FukutaY,SasakiT,YanoM.AnSNPcausedlossofseedshatteringduringricedomestication.Science,2006,312:1392–1396
[18]LiCB,ZhouAL,SangT.Ricedomesticationbyreducingshattering.Science,2006,311:1936–1939
[19LinZW,LiXR,ShannonLM,YehCT,WangML,BaiGH,PengZ,LiJR,TrickHN,ClementeTE,DoebleyJ,SchnablePS,TuinstraMR,TessoTT,WhiteF,YuJM.ParalleldomesticationoftheShattering1genesincereals.NatGenet,2012,44:720–754
[20]SimonsKJ,FellersJP,TrickHN,ZhangZC,TaiYS,GillBS,FarisJD.MolecularcharacterizationofthemajorwheatdomesticationgeneQ.Genetics,2006,172:547–555
[21]PourkheirandishM,HenselG,KilianB,SenthilN,ChenG,SameriM,AzhaguvelP,SakumaS,DhanagondS,SharmaR,MascherM,HimmelbachA,GottwaldS,NairSK,TagiriA,YukuhiroF,NagamuraY,KanamoriH,MatsumotoT,WillcoxG,MiddletonCP,WickerT,WaltherA,WaughR,FincherGB,SteinN,KumlehnJ,SatoK,KomatsudaT.Evolutionofthegraindispersalsysteminbarley.Cell,2015,162:527–539
[22]StuderA,ZhaoQ,Ross-IbarraJ,DoebleyJ.Identificationofafunctionaltransposoninsertioninthemaizedomesticationgenetb1.NatGenet,2011,43:1160–1164
[23]ZhouLL,ZhangJY,YanJB,SongRT.Twotransposableelementinsertionsarecausativemutationsforthemajordomesticationgeneteosintebranched1inmodernmaize.CellRes,2011,21:1267–1270
[24]TianZX,WangXB,LeeR,LiYH,SpechtJE,NelsonRL,McCleanPE,QiuLJ,MaJX.Artificialselectionfordeterminategrowthhabitinsoybean.ProcNatlAcadSciUSA,2010,107:8563–8568
[25]PingJQ,LiuYF,SunLJ,ZhaoMX,LiYH,SheMY,SuiY,LinF,LiuXD,TangZX,NguyenH,TianZX,QiuLJ,NelsonRL,ClementeTE,SpechtJE,MaJX.Dt2isagain-of-functionMADS-domainfactorgenethatspecifiessemideterminacyinsoybean.PlantCell,2014,26:2831–2842
[26]ZuoJR,LiJY.Moleculargeneticdissectionofquantitativetraitlociregulatingricegraindize.AnnuRevGenet,2014,48:99–118
[27]MaL,LiT,HaoCY,WangYQ,ChenXH,ZhangXY.TaGS5-3A,agrainsizegeneselectedduringwheatimprovementforlargerkernelandyield.PlantBiotechnolJ,2016,14:1269–1280
[28]CongB,BarreroLS,TanksleySD.RegulatorychangeinYABBY-liketranscriptionfactorledtoevolutionofextremefruitsizeduringtomatodomestication.NatGenet,2008,40:800–804
[29]WhittSR,WilsonLM,TenaillonMI,GautBS,BucklerES.Geneticdiversityandselectioninthemaizestarchpathway.ProcNatlAcadSciUSA,2002,99:12959–12962
[30]DingZH,WangCR,ChenS,YuSB.DiversityandselectivesweepintheOsAMT1;1genomicregionofrice.BMCEvolBiol,2011,11:1–10
[31]MaY,DaiXY,XuYY,LuoW,ZhengXM,ZengDL,PanYJ,LinXL,LiuHH,ZhangDJ,XiaoJ,GuoXY,XuSJ,NiuYD,JinJB,ZhangH,XuX,LiLG,WangW,QianQ,GeS,ChongK.COLD1conferschillingtoleranceinrice.Cell,2015,160:1209–1221
[32]TanksleySD,McCouchSR.Seedbanksandmolecularmaps:unlockinggeneticpotentialfromthewild.Science,1997,277:1063–1066
[33]WangE,WangJ,ZhuXD,HaoW,WangLY,LiQ,ZhangLX,HeW,LuBR,LinHX,MaH,ZhangGQ,HeZH.Controlofricegrain-fillingandyieldbyagenewithapotentialsignatureofdomestication.NatGenet,2008,40:1370–1374
[34]McSteenP.Auxinandmonocotdevelopment.CshPerspectBiol,2010,2:564–571
[35]LiuY,XuJX,DingYF,WangQS,LiGH,WangSH.Auxininhibitstheoutgrowthoftillerbudsinrice(OryzasativaL.)bydownregulatingOsIPTexpressionandcytokininbiosynthesisinnodes.AustJCropSci,2011,5:169–174
[36]ZhouF,LinQB,ZhuLH,RenYL,ZhouKN,ShabekN,WuFQ,MaoHB,DongW,GanL,MaWW,GaoH,ChenJ,YangC,WangD,TanJJ,ZhangX,GuoXP,WangJL,JiangL,LiuX,ChenWQ,ChuJF,YanCY,UenoK,ItoS,AsamiT,ChengZJ,WangJ,LeiCL,ZhaiHQ,WuCY,WangHY,ZhengN,WanJM.D14-SCFD3-dependentdegradationofD53regulatesstrigolactonesignalling.Nature,2013,504:406–410
[37]JiangL,LiuX,XiongGS,LiuHH,ChenFL,WangL,MengXB,LiuGF,YuH,YuanYD,YiW,ZhaoLH,MaHL,HeYZ,WuZS,MelcherK,QianQ,XuHE,WangYH,LiJY.DWARF53actsasarepressorofstrigolactonesignallinginrice.Nature,2013,504:401–405
[38]LiXY,QianQ,FuZM,WangYH,XiongGS,ZengDL,WangXQ,LiuXF,TengS,HiroshiF,YuanM,LuoD,HanB,LiJY.Controloftilleringinrice.Nature,2003,422:618–621
[39]WangWF,LiG,ZhaoJ,ChuHW,LinWH,ZhangDB,WangZY,LiangWQ.DWARFTILLER1,aWUSCHEL-relatedhomeoboxtranscriptionfactor,isrequiredfortillergrowthinrice.PLoSGenet,2014,10:e1004154
[40]XueWY,XingYZ,WengXY,ZhaoY,TangWJ,WangL,ZhouHJ,YuSB,XuCG,LiXH,ZhangQF.NaturalvariationinGhd7isanimportantregulatorofheadingdateandyieldpotentialinrice.NatGenet,2008,40:761–767
[41]AshikariM,SakakibaraH,LinSY,YamamotoT,TakashiT,NishimuraA,AngelesER,QianQ,KitanoH,MatsuokaM.Cytokininoxidaseregulatesricegrainproduction.Science,2005,309:741–745
[42LiSY,ZhaoBR,YuanDY,DuanMJ,QianQ,TangL,WangB,LiuXQ,ZhangJ,WangJ,SunJQ,LiuZ,FengYQ,YuanLP,LiCY.RicezincfingerproteinDSTenhancesgrainproductionthroughcontrollingGn1a/OsCKX2expression.ProcNatlAcadSciUSA,2013,110:3167–3172
[43]LiuL,DuYF,ShenXM,LiMF,SunW,HuangJ,LiuZJ,TaoYS,ZhengYL,YanJB,ZhangZX.KRN4controlsquantitativevariationinmaizekernelrownumber.PLoSGenet,2015,11:e1005670
[44]ZhengJ,LiuH,WangYQ,WangLF,ChangXP,JingRL,HaoCY,ZhangXY.TEF-7A,atranscriptelongationfactorgene,influencesyield-relatedtraitsinbreadwheat(TriticumaestivumL.).JExpBot,2014,65:5351–5365
[45]LiuJ,HuaW,HuZY,YangHL,ZhangL,LiRJ,DengLB,SunXC,WangXF,WangHZ.NaturalvariationinARF18genesimultaneouslyaffectsseedweightandsiliquelengthinpolyploidrapeseed.ProcNatlAcadSciUSA,2015,112:5123–5132
[46ChalhoubB,DenoeudF,LiuSY,ParkinIAP,TangHB,WangXY,ChiquetJ,BelcramH,TongCB,SamansB,CorreaM,DaSilvaC,JustJ,FalentinC,KohCS,LeClaincheI,BernardM,BentoP,NoelB,LabadieK,AlbertiA,CharlesM,ArnaudD,GuoH,DaviaudC,AlameryS,JabbariK,ZhaoMX,EdgerPP,ChelaifaH,TackD,LassalleG,MestiriI,SchnelN,LePaslierMC,FanGY,RenaultV,BayerPE,GoliczAA,ManoliS,LeeTH,ThiVHD,ChalabiS,HuQ,FanCC,TollenaereR,LuYH,BattailC,ShenJX,SidebottomCHD,WangXF,CanaguierA,ChauveauA,BerardA,DeniotG,GuanM,LiuZS,SunFM,LimYP,LyonsE,TownCD,BancroftI,WangXW,MengJL,MaJX,PiresJC,KingGJ,BrunelD,DelourmeR,RenardM,AuryJM,AdamsKL,BatleyJ,SnowdonRJ,TostJ,EdwardsD,ZhouYM,HuaW,SharpeAG,PatersonAH,GuanCY,WinckerP.Earlyallopolyploidevolutioninthepost-neolithicBrassicanapusoilseedgenome.Science,2014,345:950–953
[47]PengJR,RichardsDE,HartleyNM,MurphyGP,DevosKM,FlinthamJE,BealesJ,FishLJ,WorlandAJ,PelicaF,SudhakarD,ChristouP,SnapeJW,GaleMD,HarberdNP.‘Greenrevolution’genesencodemutantgibberellinresponsemodulators.Nature,1999,400:256–261
[48]FuXD,RichardsDE,Ait-AliT,HynesLW,OughamH,PengJR,HarberdNP.Gibberellin-mediatedproteasome-dependentdegradationofthebarleyDELLAproteinSLN1repressor.PlantCell,2002,14:3191–3200
[49]WuJ,KongXY,WanJM,LiuXY,ZhangX,GuoXP,ZhouRH,ZhaoGY,JingRL,FuXD,JiaJZ.DominantandpleiotropiceffectsofaGAIGeneinwheatresultsfromalackofinteractionbetweenDELLAandGID1.PlantPhysiol,2011,157:2120–2130
[50]杨松杰,张晓科,何中虎,夏先春,周阳.用STS标记检测矮秆基因Rht-B1b和Rht-D1b在中国小麦中的分布.中国农业科学,2006,39:1680–1688
YangSJ,ZhangXK,HeZH,XiaXC,ZhouY.DistrubitionofdwarfinggenesRht-B1binChinesebreadwheatsdetectedbySTSmarker.SciAgricSin,2006,39:1680–1688(inChinesewithEnglishabstract)
[51]AsanoK,TakashiT,MiuraK,QianQ,KitanoH,MatsuokaM,AshikariM.Geneticandmolecularanalysisofutilityofsd1allelesinricebreeding.BreedSci,2007,57:53–58
[52]WuWX,ZhengXM,LuGW,ZhongZZ,GaoH,ChenLP,WuCY,WangHJ,WangQ,ZhouKN,WangJL,WuFQ,ZhangX,GuoXP,ChengZJ,LeiCL,LinQB,JiangL,WangHY,GeS,WanJM.AssociationoffunctionalnucleotidepolymorphismsatDTH2withthenorthwardexpansionofricecultivationinAsia.ProcNatlAcadSciUSA,2013,110:277–2780
[53]YangQ,LiZ,LiWQ,KuLX,WangC,YeJR,LiK,YangN,LiYP,ZhongT,LiJS,ChenYH,YanJB,YangXH,XuML.CACTA-liketransposableelementinZmCCTattenuatedphotoperiodsensitivityandacceleratedthepostdomesticationspreadofmaize.ProcNatlAcadSciUSA,2003,110:16969–16974
[54]YanLL,LoukoianovA,TranquilliG,HelgueraM,FahimaT,DubcovskyJ.PositionalcloningofthewheatvernalizationgeneVRN1.ProcNatlAcadSciUSA,2003,100:6263–6268
[55]YanLL,LoukoianovA,BlechlA,TranquilliG,RamakrishnaW,SanMiguelP,BennetzenJL,EcheniqueV,DubcovskyJ.ThewheatVRN2geneisafloweringrepressordown-regulatedbyvernalization.Science,2004,303:1640–1644
[56]TrevaskisB,HemmingMN,PeacockWJ,DennisES.HvVRN2respondstodaylength,whereasHvVRN1isregulatedbyvernalizationanddevelopmentalstatus.PlantPhysiol,2006,140:1397–1405
[57]GuoZA,SongYX,ZhouRH,RenZL,JiaJZ.Discovery,evaluationanddistributionofhaplotypesofthewheatPpd-D1gene.NewPhytol,2010,185:841–851
[58]TurnerA,BealesJ,FaureS,DunfordRP,LaurieDA.Thepseudo-responseregulatorPpd-H1providesadaptationtophotoperiodinbarley.Science,2005,310:1031–1034
[59]StaskawiczBJ,AusubelFM,BakerBJ,EllisJG,JonesJDG.Molecular-geneticsofplant-diseaseresistance.Science,1995,268:661–667
[60]SongWY,PiLY,WangGL,GardnerJ,HolstenT,RonaldPC.EvolutionofthericeXa21diseaseresistancegenefamily.PlantCell,1997,9:1279–1287
[61]LiuYQ,WuH,ChenH,LiuYL,HeJ,KangHY,SunZG,PanG,WangQ,HuJL,ZhouF,ZhouKN,ZhengXM,RenYL,ChenLM,WangYH,ZhaoZG,LinQB,WuFQ,ZhangX,GuoXP,ChengXI,JiangL,WuCY,WangHY,WanJM.Ageneclusterencodinglectinreceptorkinasesconfersbroad-spectrumanddurableinsectresistanceinrice.NatBiotechnol,2015,33:301–305
[62]CookDE,LeeTG,GuoXL,MelitoS,WangK,BaylessAM,WangJP,HughesTJ,WillisDK,ClementeTE,DiersBW,JiangJM,HudsonME,BentAF.CopynumbervariationofmultiplegenesatRhg1mediatesnematoderesistanceinsoybean.Science,2012,338:1206–1209
[63]KrattingerSG,LagudahES,WickerT,RiskJM,AshtonAR,SelterLL,MatsumotoT,KellerB.Lr34multi-pathogenresistanceABCtransporter:molecularanalysisofhomoeologousandorthologousgenesinhexaploidwheatandothergrassspecies.PlantJ,2011,65:392–403
[64]MooreJW,Herrera-FoesselS,LanCX,SchnippenkoetterW,AyliffeM,Huerta-EspinoJ,LillemoM,ViccarsL,MilneR,PeriyannanS,KongXY,SpielmeyerW,TalbotM,BarianaH,PatrickJW,DoddsP,SinghR,LagudahE.Arecentlyevolvedhexosetransportervariantconfersresistancetomultiplepathogensinwheat.NatGenet,2015,47:1494–1498
[65]ChenM,XuZS,XiaLQ,LiLC,ChengXG,DongJH,WangQY,MaYZ.Cold-inducedmodulationandfunctionalanalysesoftheDRE-bindingtranscriptionfactorgene,GmDREB3,insoybean(GlycinemaxL.).JExpBot,2009,60:121–135
[66]JamesRA,DavenportRJ,MunnsR.PhysiologicalcharacterizationoftwogenesforNa+exclusionindurumwheat,Nax1andNax2.PlantPhysiol,2006,142:1537–1547
[67]MunnsR,JamesRA,XuB,AthmanA,ConnSJ,JordansC,ByrtCS,HareRA,TyermanSD,TesterM,PlettD,GillihamM.WheatgrainyieldonsalinesoilsisimprovedbyanancestralNa+transportergene.NatBiotechnol,2012,30:36–373
[68]JiaJZ,ZhaoSC,KongXY,LiYR,ZhaoGY,HeWM,AppelsR,PfeiferM,TaoY,ZhangXY,JingRL,ZhangC,MaYZ,GaoLF,GaoC,SpannaglM,MayerKFX,LiD,PanSK,ZhengFY,HuQ,XiaXC,LiJW,LiangQS,ChenJ,WickerT,GouCY,KuangHH,HeGY,LuoYD,KellerB,XiaQJ,LuP,WangJY,ZouHF,ZhangRZ,XuJY,GaoJL,MiddletonC,QuanZW,LiuGM,WangJ,YangHM,LiuX,HeZH,MaoL,WangJ.Aegilopstauschiidraftgenomesequencerevealsagenerepertoireforwheatadaptation.Nature,2013,496:91–95
[69]YangCW,ZhaoL,ZhangHK,YangZZ,WangH,WenSS,ZhangCY,RustgiS,vonWettsteinD,LiuB.Evolutionofphysiologicalresponsestosaltstressinhexaploidwheat.ProcNatlAcadSciUSA,2014,111:11882–11887
[70]MickelbartMV,HasegawaPM,Bailey-SerresJ.Geneticmechanismsofabioticstresstolerancethattranslatetocropyieldstability.NatRevGenet,2015,16:237–251
[71]WangLF,GeHM,HaoCY,DongYS,ZhangXY.Identifyinglociinfluencing1000-kernelweightinwheatbymicrosatellitescreeningforevidenceofselectionduringbreeding.PLoSOne,2012,7:e29432
[72]ZhangDL,HaoCY,WangLF,ZhangXY.Identifyinglociinfluencinggrainnumberbymicrosatellitescreeninginbreadwheat(TriticumaestivumL.).Planta,2012,236:1507–1517
[73]ZhangHK,ZhuB,QiB,GouXW,DongYZ,XuCM,ZhangBJ,HuangW,LiuC,WangXT,YangCW,ZhouH,KashkushK,FeldmanM,WendelJF,LiuB.EvolutionoftheBBAAcomponentofbreadwheatduringitshistoryattheallohexaploidlevel.PlantCell,2014,26:2761–2776
[74]XuK,XuX,FukaoT,CanlasP,Maghirang-RodriguezR,HeuerS,IsmailAM,Bailey-SerresJ,RonaldPC,MackillDJ.Sub1Aisanethylene-response-factor-likegenethatconferssubmergencetolerancetorice.Nature,2006,442:705–708
[75]PelemanJD,vanderVoortJR.Breedingbydesign.TrendsPlantSci,2003,8:330–334
[76]SnowdonRJ,AbbadiA,KoxT,SchmutzerT,LeckbandG.Heterotichaplotypecapture:precisionbreedingforhybridperformance.TrendsPlantSci,2015,20:410–413