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Acta Agron Sin ›› 2012, Vol. 38 ›› Issue (11): 1997-2006.doi: 10.3724/SP.J.1006.2012.01997

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS • Previous Articles     Next Articles

Association between Starch Pasting Properties and DArT Markers in Common Wheat

YU Hai-Xia,TIAN Ji-Chun*   

  1. State Key Laboratory of Crop Biology / Shandong Key Laboratory of Crop Biology, Shandong Agricultural University, Tai’an 271018, China
  • Received:2012-03-19 Revised:2012-07-05 Online:2012-11-12 Published:2012-09-10
  • Contact: 田纪春, E-mail: jctian@sdau.edu.cn, Tel: 0538-8242040 E-mail:yuhaixia66@126.com

Abstract:

Starch pasting properties are important indicators in the evaluation of processing quality and quality breeding in wheat (Triticum aestivum L.), which are commonly represented by RVA parameters including peak viscosity, trough viscosity, breakdown, final viscosity, setback, and pasting temperature. These RVA parameters of Aimengniu and its derived progenies planted in five environments in two locations from 2007 to 2010 were determined, and the association between the RVA parameters and 971 DArT (Diversity Array Technology) markers were analyzed using mixed linear model. Seventy DArT markers distributed on 19 chromosomes were significantly associated with the six RVA parameters (P ≤ 0.001, R2 = 0.2–23.3%). The markers on chromosomes 2A, 2B, and 2D were identified to have large effects and associated with several RVA parameters. This result provides an important information for marker-assisted selection on starch pasting properties in wheat.

Key words: Wheat, RVA parameters, Aimengniu, Association mapping, DArT markers

[1]Panozzo J F, McCormick K M. The Rapid Viscoity Analyser as a method of testing for noodle quality in a wheat breeding program. J Cereal Sci, 1993, 17: 25-32



[2]Liu J J, He Z H, Zhao Z D, Pena R T, Rajaram S. Wheat quality traits and quality parameters of cooked dry white noodle. Euphytica, 2003, 131: 147-154



[3]Yao D-N(姚大年), Li B-Y(李保云), Liang R-Q(梁荣奇), Liu G-T(刘广田). Effects of wheat genotypes and environments to starch properties and noodle quality. J China Agric Univ (中国农业大学学报), 2000, 5(1): 63-68 (in Chinese with English abstract)



[4]Li J-G(李继刚), Liang R-Q(梁荣奇), Zhang Y-Q(张义荣), Li B-Y(李保云), Liu G-T(刘广田). Production of waxy common wheat and its starch properties. J Triticeae Crops (麦类作物学报), 2001, 21(2): 10-13 (in Chinese with English abstract)



[5]Zhao H(赵华), Li L-H(李立会), Yang X-M(杨欣明), Li X-Q(李秀全), Harold C. Study on physicochemical properties of starches from wheat- Agropyron-cristatum alien derivative lines. J Qinghai Univ (青海大学学报), 2000, 18(4): 15-21 (in Chinese with English abstract)



[6]Li T(李韬), Xu C-W(徐辰武), Hu Z-Q(胡治球), Li Y-L(李玉兰), Sun C-S(孙长森), Gu S-L(顾世梁). RVA pasting properties of wheat hybrid and the relations with their parents. J Triticeae Crops (麦类作物学报), 2003, 23(1): 17-20 (in Chinese with English abstract)



[7]Li T(李韬), Xu C-W(徐辰武), Hu Z-Q(胡治球), Sun C-S(孙长森), Li G(李刚), Gu S-L(顾世梁). Genetic potentials of wheat flour RVA pasting characteristics and cluster analysis. Life Sci Res (生命科学研究), 2002, 6(4): 288-292 (in Chinese with English abstract)



[8]Udall J A, Souza E, Anderson J, Sorrells M E, Zemtra R S. Quantitative trait loci for flour viscosity in winter wheat. Crop Sci, 1999, 39: 238-242



[9]Kuchel H, Langridge P, Mosionek L, Williams K, Jefferies S P. The genetic control of milling yield, dough rheology and baking quality of wheat. Theor Appl Genet, 2006, 112: 1487-1495



[10]Batey I L, Hayden M J, Cai S, Sharp P J, Cornish G B, Morell M K, Appels R. Genetic mapping of commercially significant starch characterstics in wheat crosses. Aust J Agric Res, 2001, 52: 1287-1296



[11]Wu Y-P(吴云鹏), Zhang Y-L(张业伦), Xiao Y-G(肖永贵), Yan J(阎俊), Zhang Y(张勇), Zhang X-K(张晓科), Zhang L-M(张利民), Xia X-C(夏先春), He Z-H(何中虎). QTL mapping for important quality traits in common wheat. Sci Agric Sin (中国农业科学), 2008, 41(2): 331-339 (in Chinese with English abstract)



[12]Flint-Garcia S A, Thornsberry J M, Buckler E S. Structure of linkage disequilibrium in plants. Annu Rev Plant Biol, 2003, 54: 357-374



[13]Zhu C, Gore M, Buckler E S, Yu J. Status and prospects of association mapping in plants. Plant Genome, 2008, 1: 5-20



[14]Ingvarsson P K, Nathaniel R S. Association genetics of complex traits in plants. New Phytol, 2011, 189: 909-922



[15]Huang X H, Wei X H, Sang T, Zhao Q, Feng Q, Zhao Y, Li C Y, Zhu C Y, Lu T T, Zhang Z Z, Li M, Fan D L, Guo Y L, Wang A, Wang L, Deng L W, Li W J, Lu Q, Weng Q J, Liu K Y, Huang T, Zhou T Y, Jing Y F, Li W, Lin Z, Buckler E S, Qian Q, Zhang Q F, Li J Y, Han B. Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet, 2010, 42: 961-967



[16]Breseghello F, Sorrells M E. Association mapping of kernel size and milling quality in wheat (Triticum aestivum L.) cultivars. Genetics, 2005, 172: 1165-1177



[17]Tian F, Bradbury P J, Brown P J, Hung H, Sun Q, Flint-Garcia S, Rocheford T R, McMullen M D, Holland J B, Buckler E S. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet, 2011, 43: 159-162



[18]Maccaferri M, Sanguineti M C, Demontis A, El-Ahmed A, Moral G, Maalouf F, Nachit M, Nerallah N, Ouabbou H, Rhouma S, Royo C, Villegas N, Tuberosa R. Association mapping in durum wheat grown across a broad range of water regimes. J Exp Bot, 2011, 62: 409-438



[19]Yu H-X(于海霞), Xiao J(肖静), Tian J-C(田纪春). Genetic dissection of milestone parent Aimengniu and its derivatives. Sci Agric Sin (中国农业科学), 2012, 45(2): 199-207 (in Chinese with English abstract)



[20]Akbari M, Wenzl P, Caig V, Carling J, Xia L. Yang S, Uszynski G, Mohler V, Lehmensiek A, Kuchel H, Hoyden M J, Howes N, Sharp P, Vaughan P, Rathmell B, Hutter E, Kilian A. Diversity arrays technology (DArT) for high-throughput profiling of the hexaploid wheat genome. Theor Appl Genet, 2006, 113: 1409-1420



[21]Semagn K, Bjornstad H, Skinnes A G, Marφy Y, Tarkegne, William M. Distribution of DArT, AFLP and SSR markers in a genetic linkage map of a double haploid hexaploid wheat population. Genome, 2006, 49: 545-555



[22]Lillemo M, Asalf B, Singh R P, Huerta-Espino J, Chen X M, He Z H, Biornstad A. The adult plant rust resistance loci Lr34/Yr18 and Lr46/Yr29 are important determinants of partial resistance to powdery mildew in bread wheat line Saar. Theor Appl Genet, 2008, 116: 1155-1166



[23]Mantovani P, Maccaferri M, Sanguineti M C, Tuberosa R, Catizone I, Wenzl P, Thomson B, Carling J, Huttner E, DeAmbrogio E, Kilian A. An integrated DArT-SSR linkage map of durum wheat. Mol Breed, 2008, 22: 629-648



[24]Wenzl P, Carling J, Kudrna D, Jaccoud D, Huttner E, Kleinhofs A, Kilian A. Diversity Arrays Technology (DArT) for whole genome profiling of barley. Proc Natl Acad Sci USA, 2004, 101: 9915-9920



[25]Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W, Lagudan E, Somers D, Kilian A, Alaux M, Vautrin S, Berges H, Eversole K, Appels R, Safar J, Simkova H, Dolezel J, Bernard M, Feuillet C. A physical map of the 1-Gigabase bread wheat chromosome 3B. Science, 2008, 322: 101-104



[26]Voorrips R E. MapChart, software for the graphical presentation of linkage maps and QTLs. J Hered, 2002, 93: 77-78



[27]Pritchard JK, Stephens M, Donnelly P. Inference of population structure from multilocus genotype data. Genetics, 2000, 155: 945-959



[28]Comadran J, Thomas W T B, van Eeuwijk F A, Caccarelli S, Grando S, Stanca A M, Pecchioni N, Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat P R, Roose M L, Svensson J T, Stein N, Varhney R K, Marshall D F, Graner A, Close T J, Waugh R. Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proc Natl Acad Sci USA, 2006, 103: 18656-18661



[29]Rahman S, Li Z, Batey I, Cochrane M P, Appels R, Morell M. Genetic alteration of starch functionality in wheat. J Cereal Sci, 2000, 31: 91-110



[30]Clark J R, Robertson M, Anisworth C C. Nucleotide sequence of a wheat (Triticum aestivum L.) cDNA clone encoding the wary protein. Plant Mol Biol, 1991, 16: 1099-1101



[31]Ainsworth C, Tarvis M, Clark J. Isolation and analysis of cDNA clone encoding the small subunit of ADP-glucose pyrophosphorylase from wheat. Plant Mol Biol, 1993, 23: 23-33



[32]Li Z Y, Mouille G, Kosar-Hashemi B, Rahman S, Clarke B, Gale K R, Appels R, Morell M K. The structure and expression of wheat starch synthase III gene. Motif in the expressed gene define the line age of the starch starch synthase III gene family. Plant Physiol, 2000, 123: 612-624



[33]Bordes J, Ravel C, Gouis J L, Lapierre A, Charmet G, Balfourier F. Use of a global wheat core collection for association analysis of flour and dough quality traits. J Cereal Sci, 2011, 54: 137-147



[34]Yu J, Pressoir G, Briggs W H, Bi I V, Yamasaki M, Doebley J, McMullen M D, Gaut B S, Nielsen D M, Holland J B, Kresovich S, Buckler E S. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet, 2006, 38: 203-208

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