花生膜联蛋白基因家族成员的结构和表达分析

doi:10.3724/SP.J.1006.2019.84056

Abstract

Abstract:

Annexin is a kind of calcium-dependent phospholipid binding proteins involved in the regulation of plant metabolism, growth and development, drought resistance and salt tolerance, and its structure is species-specific in different plants. In order to have a systematic analysis of the annexin gene family of peanut, we identified 30 annexin genes from the peanut genome database, and analyzed their characteristics using bioinformatics method. Peanut annexin (annexin of Arachis hypogaea, AnnAh) genes were unevenly distributed on 13 chromosomes, with 13 in A genome and 17 in B genome. There were 2 to 8 introns in the AnnAhs, with 5 to 6 introns in most AnnAhs. Phylogenetic analysis showed that the clustering relationship was complex. The annexins of lower plant, monocotyledonous and dicotyledonous plants were distributed at interval, with AnnAhs inserting in each branch. However, in each small branch, AnnAhs were basically clustered with the dicotyledonous plant annexins, and close to soybean, alfalfa and sunflower, followed by Arabidopsis; but several AnnAhs were associated with monocotyledonous and lower plant annexins. All 30 AnnAhs had no transmembrane domain, and 16 of them were located in cytoplasm, and the others’ localization was uncertain. Results of alternative splicing (AS) analysis of AnnAhs showed that only 11 AnnAhs experienced AS, which accounted for about 38% of all AnnAhs; the AS events occurred most in roots, followed by leaves, and the least in seeds. The expression level of AnnAhs was high in seed2 and root, followed by seed1, and lower in leaf. The comprehensive analysis of AnnAhs can provide some theoretical support for peanut resistance breeding.

Key words: peanut, annexin, gene structure analysis, alternative splicing analysis, expression pattern analysis

Hui-Min WANG,Xin-Guo LI,Shu-Bo WAN,Zhi-Meng ZHANG,Hong DING,Guo-Wei LI,Wen-Wei GAO,Zhen-Ying PENG. Structure and expression analysis of the members of peanut annexin gene family[J].Acta Agronomica Sinica, 2019, 45(3): 390-400.

Figures/Tables 6

Table 1

Anneixn genes family in peanut"

基因名称 Gene name	染色体位置 Chr. position	氨基酸个数 Amino acid number	亚细胞定位 Subcellular localization	蛋白完整性 Protein integrity	Annexin 结构域 Annexin domain	重复序列 Repetitive sequence	其他结构域 Other domains
Aradu.V26BD	Aradu.A03	279	C	完整 Complete	4	4	0
Aradu.86DER	Aradu.A03	286	–	不完整 Incomplete	4	3	0
Aradu.KJ1YM	Aradu.A04	274	–	不完整 Incomplete	3	2	0
Aradu.3L5NK	Aradu.A05	315	C	完整 Complete	4	4	0
Aradu.WYZ5E	Aradu.A05	323	C	不完整 Incomplete	4	4	0
Aradu.9BC7H	Aradu.A07	342	C	不完整 Incomplete	4	4	0
Aradu.23XWK	Aradu.A08	309	C	不完整 Incomplete	3	3	0
Aradu.N8MUP	Aradu.A08	279	–	不完整 Incomplete	3	3	0
Aradu.4J11T	Aradu.A08	339	–	不完整 Incomplete	3	3	0
Aradu.S16C5	Aradu.A08	321	–	完整 Complete	4	4	0
Aradu.SCC75	Aradu.A10	266	C	不完整 Incomplete	3	3	0
Aradu.IZQ3Z	Aradu.A10	315	C	完整 Complete	4	4	0
Aradu.MBZ2M	Aradu.A10	333	–	完整 Complete	2	2	0
Araip.1LR8I	Araip.B02	89	C	不完整 Incomplete	2	2	0
Araip.KR6F4	Araip.B03	323	–	完整 Complete	2	2	2
Araip.X0F2S	Araip.B03	317	–	完整 Complete	4	4	0
Araip.CCM9G	Araip.B03	286	–	不完整 Incomplete	4	3	0
Araip.RGY04	Araip.B04	142	C	不完整 Incomplete	1	1	0
Araip.R8WRM	Araip.B04	207	–	不完整 Incomplete	3	2	0
Araip.HD6QL	Araip.B05	316	C	完整 Complete	4	4	0
Araip.0MR1X	Araip.B05	315	C	完整 Complete	4	4	0
Araip.FX5SI	Araip.B07	316	C	完整 Complete	4	4	0
Araip.J58EQ	Araip.B08	135	C	不完整 Incomplete	2	2	0
Araip.YGP4J	Araip.B08	315	–	完整 Complete	3	3	0
Araip.6KP6U	Araip.B08	295	–	完整 Complete	3	3	0
Araip.Y8EDR	Araip.B08	321	–	完整 Complete	4	4	0
Araip.X9BIG	Araip.B10	317	C	完整 Complete	4	4	0
Araip.Z0Q6Q	Araip.B10	311	C	完整 Complete	4	3	0
Araip.WA456	Araip.B10	315	C	完整 Complete	4	3	0
Araip.RPP1M	Araip.B10	364	–	完整 Complete	2	2	0
Aradu.V26BD	Aradu.A03	279	C	完整 Complete	4	4	0
Aradu.86DER	Aradu.A03	286	–	不完整 Incomplete	4	3	0

Table 1

Fig. 1

Fig. 2

Fig. 3

Table 2

Fig. 4

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基因名称 Name	种子前期 Seed1	种子后期 Seed2	根 Root	叶 Leaf
Aradu.S16C5	—	—	TSS	—
Aradu.N8MUP	—	—	TSS	—
Aradu.3L5NK	—	—	—	TTS
Araip.CCM9G	—	TTS, AE	—	TTS, AE
Araip.WA456	—	—	TTS, AE	—
Aradu.IZQ3Z	TTS, AE	AE	AE	AE
Araip.HD6QL	TSS, ES	TSS, ES	—	—
Aradu.KJ1YM	TTS	—	TTS	TTS, AE, ES
Araip.Z0Q6Q	—	—	ES	—
Araip.R8WRM	—	—	ES	—
Araip.RPP1M	—	—	ES	—

Structure and expression analysis of the members of peanut annexin gene family

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