新疆冬小麦籽粒品质性状遗传差异与关联分析

doi:10.3724/SP.J.1006.2024.31030

Abstract

Abstract:

Seven grain quality traits were tested in the panel of 188 winter wheat accessions from Xinjiang. Twelve co-associated genetic loci were detected in four different environments via GWAS, explaining 6.021%-31.467% phenotypic variation. Two pleiotropism loci, located on chromosomes 6A and 2B, associated with protein content and settlement value, protein content and bulk density of wheat. Five pleiotropism loci, located on 3A, 1B, 6B, 7B, and 7D, shared by protein content and wet gluten content. One pleiotropism locus, located on 5B chromosome, associated with settlement value, bulk density of wheat and grain hardness. Three pleiotropism loci located on 7A, 3B, and 2D, respectively, which shared by protein content, settlement value, and wet gluten content, while one pleiotropism locus with unknown site was also associated with protein content, settlement value, and wet gluten content. These associated loci or genes might be employed to select favorite wheat genotypes, and cultivate elite wheat genotypes via marker-assisted selection in wheat quality breeding. Candidate genes at stable loci associated with multiple traits were searched, and 11 candidate genes that might be related to wheat grain quality with multiple traits and environments were screened. Among them, TraesCS6B01G347500 encoded a storage and transportation protein, TraesCS1B01G395400 encoded a carbohydrate transport protein/sugar transport protein, and TraesCS2D01G246500 gene encoded a protein ESKIMO1 related to cold tolerance, salt tolerance, and water conservation. These genes can be used as candidate genes for allelic variation analysis and marker development, provide molecular tools for wheat marker assisted selection breeding.

Key words: Xinjiang, winter wheat, kernel quality, genetic diversity, genome-wide association analysis

MA Yan-Ming, LOU Hong-Yao, WANG Wei, SUN Na, YAN Guo-Rong, ZHANG Sheng-Jun, LIU Jie, NI Zhong-Fu, XU Lin. Genetic difference and genome association analysis of grain quality traits in Xinjiang winter wheat[J].Acta Agronomica Sinica, 2024, 50(6): 1394-1405.

Figures/Tables 6

Table 1

Table 2

Comparison of grain quality traits between wheat landraces and modern cultivars"

性状 Trait	环境 Environment	地方品种Landrace				育成品种Bred cultivar				各性状均值差 MD
性状 Trait	环境 Environment	变幅 Range	平均值 Average	标准差 STD	变异系数 CV (%)	变幅 Range	平均值 Average	标准差 STD	变异系数 CV (%)	各性状均值差 MD
籽粒蛋白质含量GPC (%)	E1	12.68-19.99	15.45	1.59	10.30	13.55-22.30	16.51	1.97	11.96	-1.07
	E2	13.62-18.69	15.63	1.04	6.63	14.05-22.09	16.62	1.69	10.16	-1.00
	E3	12.84-19.97	15.64	1.24	7.92	12.12-18.45	14.42	1.16	8.04	1.21
	E4	13.44-17.54	15.53	0.77	4.98	12.68-18.89	14.99	1.11	7.40	0.54
湿面筋含量 WGC (%)	E1	27.89-44.70	34.28	3.61	10.53	30.63-50.26	37.40	4.39	11.73	-3.11
	E2	29.60-41.77	34.48	2.40	6.95	31.29-51.58	37.70	3.84	10.18	-3.23
	E3	27.66-41.65	33.58	2.70	8.03	25.29-41.42	31.92	2.87	9.00	1.66
	E4	28.73-37.87	33.56	1.82	5.44	26.78-42.60	33.13	2.59	7.81	0.43
沉降值 SV (mL)	E1	29.85-54.05	39.95	5.19	12.99	31.33-65.21	41.82	7.53	18.00	-1.87
	E2	25.09-43.71	34.33	3.76	10.95	26.29-58.39	37.77	7.21	19.09	-3.44
	E3	21.94-65.53	39.58	6.81	17.22	21.47-44.58	31.44	5.02	15.98	8.14
	E4	25.73-48.84	36.64	4.12	11.24	20.94-47.43	32.47	5.18	15.95	4.17
淀粉含量 ST (%)	E1	65.43-73.70	70.43	1.53	2.17	64.35-73.59	70.13	2.19	3.12	0.30
	E2	67.37-73.93	71.37	1.25	1.75	63.38-73.77	69.94	2.25	3.21	1.42
	E3	55.50-74.64	67.89	2.92	4.30	63.96-76.08	70.89	2.33	3.28	-3.00
	E4	63.07-72.45	68.44	1.85	2.70	62.15-72.94	69.90	2.11	3.01	-1.46
籽粒硬度 GH (%)	E1	52.72-69.61	63.75	2.78	4.35	58.45-76.91	69.61	4.14	5.94	-5.87
	E2	51.05-70.25	63.60	3.16	4.97	54.53-76.40	68.69	4.99	7.27	-5.09
	E3	43.26-68.13	61.35	3.79	6.18	58.38-79.31	68.55	4.06	5.92	-7.20
	E4	56.55-69.29	62.89	2.35	3.73	57.39-74.93	67.06	3.66	5.46	-4.18
出粉率 PER (%)	E1	67.65-74.57	71.08	1.38	1.93	67.34-76.54	72.42	2.07	2.85	-1.34
	E2	69.32-75.36	73.15	1.16	1.59	68.99-76.50	72.71	2.03	2.79	0.45
	E3	49.39-74.85	70.07	3.31	4.73	65.80-76.25	72.43	2.06	2.85	-2.36
	E4	66.96-74.61	71.33	1.42	1.99	66.14-75.34	71.74	1.82	2.54	-0.41
容重 TW (g L^-1)	E1	773.73-824.06	799.52	9.74	1.22	765.59-848.13	804.06	20.17	2.51	-4.54
	E2	799.86-830.42	817.48	6.89	0.84	779.10-842.03	812.54	17.39	2.14	4.94
	E3	732.22-831.40	774.04	18.22	2.35	739.17-834.47	801.08	19.92	2.49	-27.04
	E4	753.31-823.28	783.44	13.20	1.68	729.87-818.90	792.64	17.39	2.19	-9.19

Table 2

Fig. 1

Table 3

Fig. 2

Table 4

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序号No.	编号Code	年份Year	地点Location	经度Longitude (°E)	纬度Latitude (°N)
E1	AN2017	2017	新疆乌鲁木齐市Urumqi, Xinjiang	86.22	44.31
E2	AN2018	2018	新疆乌鲁木齐市Urumqi, Xinjiang	86.22	44.31
E3	YN2017	2017	新疆伊宁市Yining, Xinjiang	81.32	43.92
E4	YN2018	2018	新疆伊宁市Yining, Xinjiang	81.32	43.92

性状 Trait	籽粒蛋白质含量GPC (%)	湿面筋含量 WGC (%)	沉降值 SV (mL)	淀粉含量 ST (%)	籽粒硬度 GH (%)	出粉率 PER (%)	容重 TW (g L^-1)
GPC	E1 →	0.993^**	0.916^**	-0.819^**	0.111	-0.198^**	0.033
WGC	0.984^**		0.898^**	-0.809^**	0.188^*	-0.156^*	0.027
SV	0.901^**	0.880^**		-0.830^**	0.068	-0.292^**	-0.139
ST	-0.875^**	-0.888^**	-0.769^**		0.124	0.582^**	0.381^**
GH	0.024	0.151^*	0.168^*	0.032		0.671^**	0.348^**
PER	-0.545^**	-0.509^**	-0.402^**	0.717^**	0.447^**		0.626^**
TW	-0.449^**	-0.471^**	-0.504^**	0.671^**	0.483^**	0.602^**	← E2
GPC	E3 →	0.973^**	0.894^**	-0.804^**	-0.485^**	-0.598^**	-0.482^**
WGC	0.963^**		0.831^**	-0.749^**	-0.321^**	-0.542^**	-0.428^**
SV	0.879^**	0.792^**		-0.840^**	-0.557^**	-0.615^**	-0.579^**
ST	-0.799^**	-0.749^**	-0.786^**		0.680^**	0.808^**	0.747^**
GH	-0.288^**	-0.110	-0.298^**	0.488^**		0.681^**	0.592^**
PER	-0.632^**	-0.626^**	-0.552^**	0.814^**	0.419^**		0.573^**
TW	-0.553^**	-0.514^**	-0.596^**	0.872^**	0.467^**	0.679^**	← E4

性状 Trait	标记 Marker	染色体 Chr.	位置 Position	P值(均值) P-value (mean)	表型变异率PVE (%)
籽粒蛋白质含量/沉降值GPC/SV	AX_109046760	6A	375,955,442	3.67E-04	8.208-10.613
籽粒蛋白质含量/容重GPC/TW	AX_111542084	2B	595,845,967	4.04E-04	8.601-12.774
籽粒蛋白质含量/湿面筋含量GPC/WGC	AX_89596424	3A	513,927,853	2.81E-04	9.510-17.708
籽粒蛋白质含量/湿面筋含量GPC/WGC	AX_111067142	1B	627,053,917	2.69E-04	9.153-10.943
籽粒蛋白质含量/湿面筋含量GPC/WGC	AX_111566434	6B	612,059,412	4.49E-04	6.554-10.619
籽粒蛋白质含量/湿面筋含量GPC/WGC	AX_111499605	7B	568,091,130	4.37E-04	8.395-11.468
籽粒蛋白质含量/湿面筋含量GPC/WGC	AX_111106049	7D	135,928,531	7.41E-04	6.463-9.147
沉降值/容重/籽粒硬度SV/TW/GH	AX_109272182	5B	26,961,478	1.41E-04	8.207-14.775
籽粒蛋白质含量/沉降值/湿面筋含量GPC/SV/WGC	AX_111474675	7A	646,938,062	1.71E-04	9.625-13.464
籽粒蛋白质含量/沉降值/湿面筋含量GPC/SV/WGC	AX_108790822	3B	141,628,162	2.68E-04	9.530-12.222
籽粒蛋白质含量/沉降值/湿面筋含量GPC/SV/WGC	AX_109792377	2D	287,999,674	6.42E-04	6.233-10.184
籽粒蛋白质含量/沉降值/湿面筋含量/容重GPC/SV/WGC/TW	AX_111768696	UN	239	4.24E-04	8.451-14.836

Genetic difference and genome association analysis of grain quality traits in Xinjiang winter wheat

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