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Acta Agronomica Sinica ›› 2025, Vol. 51 ›› Issue (9): 2527-2537.doi: 10.3724/SP.J.1006.2025.44216

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Functional verification of the key gene NtLPAT involved in lipid biosynthesis in tobacco

JI Bai-Lu1,3,**(), SUN Yi-Wen1,**(), LIU Wan-Feng2, QIAN Ya-Xin1,3, JIANG Cai-Hong1, GENG Rui-Mei1, LIU Dan1, CHENG Li-Rui1, YANG Ai-Guo1, HUANG Li-Yu3, LI Xiao-Xu2, PU Wen-Xuan2, GAO Jun-Ping2,*(), ZHANG Qiang4,*(), WEN Liu-Ying1,*()   

  1. 1Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, Shandong, China
    2China Tobacco Hunan Industrial Co., Ltd., Changsha 410007, Hunan, China
    3School of Agriculture, Yunnan University, Kunming 650500, Yunnan, China
    4Tobacco Institute of Shaanxi Province, Xi’an 710061, Shaanxi, China
  • Received:2024-12-24 Accepted:2025-06-04 Online:2025-09-12 Published:2025-06-16
  • Contact: *E-mail: wenliuying@caas.cn; E-mail: 283240782@qq.com; E-mail: gaojp0104@hngy.tobacco.com E-mail:ji15935932310@163.com;312888167@qq.com;gaojp0104@hngy.tobacco.com;283240782@qq.com;wenliuying@caas.cn
  • About author:**Contributed equally to this work
  • Supported by:
    Agricultural Science and Technology Innovation Program of CAAS(ASTIP-TRIC01);Natural Science Foundation of Shandong Province, China(ZR2023MC139);Natural Science Foundation of Tobacco Genome Project of State Tobacco Monopoly Administration (110202201010(JY-17);Technology Project of the Shaanxi Provincial Company of China National Tobacco Corporation(KJ-2023-02)

Abstract:

Lysophosphatidyl transferase (LPAT) is a key enzyme in the lipid biosynthesis pathway, catalyzing the transfer of a fatty acyl group from fatty acyl-CoA (Acyl-CoA) to lysophosphatidic acid (LPA) to produce phosphatidic acid (PA). However, the functional role of LPAT in tobacco remains largely unexplored. In this study, we cloned the NtLPAT gene from the tobacco cultivar K326 and generated an NtLPAT knockout mutant (ntlpat) using CRISPR/Cas9 technology. The ntlpat mutant was evaluated for agronomic traits, disease resistance, and phenotypic appearance. In addition, lipidomic and transcriptomic analyses were conducted to assess the impact of NtLPAT loss of function. Our results showed that NtLPAT expression was induced by infection with Ralstonia solanacearum and Phytophthora parasitica. The ntlpat mutant exhibited reduced plant height but enhanced resistance to cucumber mosaic virus (CMV) and bacterial wilt. Lipidomic analysis revealed altered glyceride metabolism in the mutant: triacylglycerol (TAG) levels were significantly decreased, while the contents of two major glycerol glycolipids—monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), both critical components of the thylakoid membrane—were increased. Additionally, changes were observed in sphingolipid and phosphatidylinositol compositions. Transcriptomic analysis indicated that genes involved in photosynthesis, carbon fixation, sphingolipid biosynthesis, and phosphatidylinositol signaling pathways were reprogrammed in ntlpat. These findings suggest that NtLPAT possesses acyltransferase activity, regulates de novo TAG biosynthesis, and plays a role in cellular signaling pathways, thereby affecting tobacco growth and resistance to CMV and R. solanacearum. This study provides valuable genetic resources and an experimental basis for tobacco breeding improvement.

Key words: lysophosphatidyl transferase, tobacco, gene knock-out, lipidomics, transcriptome

Fig. 1

Sequence alignment and expression pattern analysis of the NtLPAT gene In Fig. A, M represents the DL 2000 marker, lane 1 is the negative control, and lane 2 is the target band. Fig. B shows the alignment of LPAT sequences from tobacco, potato, pepper, and tomato. Fig. C illustrates the expression levels of NtLPAT in different tobacco tissues, Root: underground part; Shoot: aboveground part; Shoot apex: shoot tip. Fig. D illustrates the expression pattern of NtLPAT in response to blackleg disease, 0, 6, 12, and 24 hpi represent 0, 6, 12, and 24 hours post-inoculation, R denotes the black shank-resistant tobacco variety BH1000-1, and S denotes the black shank-susceptible tobacco variety Xiaohuangjin 1025. Fig. E illustrates the expression pattern of NtLPAT in response to Ralstonia solanacearum infection, 3, 9, and 24 hpi represent 3, 9, and 24 hours post-inoculation, R denotes the bacterial wilt-resistant tobacco variety Fandi 3-Bing, S denotes the bacterial wilt-susceptible tobacco variety Honghuadajinyuan, CK represents the non-inoculated control, and RS represents the inoculation with Ralstonia solanacearum. *, **, and *** indicate significant differences at the 0.05, 0.01, and 0.001 levels, respectively."

Fig. 2

Identification of Ralstonia solanacearum resistance in ntlpat Fig. A shows the peak chart for the identification of transgenic materials; Fig. B represents the disease index of K326 and ntlpat inoculated with the bacterial wilt pathogen at 14, 18, 22, 25, 28, 32, and 35 days post-inoculation; Fig. C illustrates the status of tobacco seedlings inoculated with K326 and ntlpat at 0 days and 35 days. * indicates a significant difference (P < 0.05)."

Table 1

Analysis of virus disease resistance in the ntlpat mutant line"

样品Sample TMV PVY CMV
K326 38.26±8.03 b 60.93±3.51 a 39.23±8.85 b
ntlpat 63.75±11.36 a 66.35±4.31 a 20.43±4.66 a

Table 2

Main agronomic traits of ntlpat mutant lines"

样品
Sample
株高
Plant height
(cm)
茎围
Stem circumference (cm)
节距
Stem pitch
(cm)
叶数
Leaf number
腰叶长
Middle leaf length (cm)
腰叶宽
Middle leaf width (cm)
K326 103.60±2.07 a 8.28±4.25 a 5.05±0.45 a 17.40±0.89 a 67.10±2.08 a 24.00±1.96 a
ntlpat 82.50±8.89 b 8.48±0.45 a 3.40±0.65 b 16.75±1.26 a 63.60±4.59 a 23.38±2.43 a

Table 3

Appearance evaluation of ntlpat mutant tobacco leaves"

样品
Sample
颜色
Color
成熟度
Maturity
油分
Oil
身份
Body
结构
Structure
色度
Color intensity
总分
Score
量化总分
Quantify the total score
K326 7 8 8 9 8 6 46 7.71
ntlpat 7 8 6 9 8 5 43 7.47

Fig. 3

Lipidomic analysis of the ntlpat mutant line Fig. A is the KEGG classification of differential metabolites; Fig. B is a schematic diagram of differential lipids in lipid metabolic pathways. TG: triglyceride; PG: phosphatidylglycerol; MGDG: monogalactosyldiacylglycerol; DGDG: digalactosyldiacylglycerol; Cer: ceramide; SPH: sphingomyelin; PC: phosphatidylglycerol; LPA: lyso-phosphatidic acid; LPC: lyso-phosphatidylcholine."

Fig. 4

Metabolomic analysis of the ntlpat mutant line Fig. A shows the GO enrichment bar chart of differentially expressed genes; Fig. B shows the KEGG enrichment bubble plot of differentially expressed genes; Fig. C is differentially expressed gene map of phospholipid synthesis pathway and photosynthetic system complex."

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