小麦抗条锈病相关性状元分析及候选基因分析

doi:10.3724/SP.J.1006.2025.41069

Abstract

Abstract:

Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), poses a serious threat to global wheat production. In this study, we performed a comprehensive meta-analysis of 480 published quantitative trait loci (QTL) and known resistance genes (Yr) associated with stripe rust resistance in wheat. These QTLs were projected onto a consensus genetic map, resulting in the identification of 90 meta-QTLs (MQTLs). Among these MQTLs, 16 were associated with disease severity (DS), 10 with infection type (IT), 7 with the area under the disease progress curve (AUDPC), and 3 with other resistance-related traits. Additionally, 19 MQTLs were associated with both DS and IT, 20 with DS and AUDPC, and 15 with IT and AUDPC. The MQTLs were unevenly distributed across the 21 wheat chromosomes, with several forming clusters. These MQTLs explained phenotypic variances ranging from 2.00% to 63.01%, with confidence intervals spanning 0.01 to 24.60 cM. Thirteen MQTLs co-localized with known resistance genes, including Yr5, Yr7, Yr17, Yr18, Yr28, Yr29, Yr30, Yr44, Yr48, Yr52, Yr54, Yr67, and Yr82. Furthermore, candidate gene (CG) analysis identified 72 genes within the MQTL regions. Functional annotation and expression profiling revealed that many of these CGs encode proteins involved in sugar transport or contain resistance-related domains such as NBS-LRR, WRKY, and F-box. Expression analysis across different leaf tissues further supported their potential roles in defense responses. These findings provide valuable molecular markers and candidate genes for the pyramiding of resistance QTLs/genes, offering a promising strategy for developing stripe rust-resistant wheat cultivars and contributing to global food security.

Key words: wheat, stripe rust, meta-analysis, MQTL

ZHANG Fei-Fei, HE Wan-Long, JIAO Wen-Juan, BAI Bin, GENG Hong-Wei, CHENG Yu-Kun. Meta-analysis of stripe rust resistance-associated traits and candidate gene identification in wheat[J].Acta Agronomica Sinica, 2025, 51(8): 2111-2127.

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MQTLs	染色体 Chr.	共定位基因 Co-localized gene
MQTL1B.3	1B	Yr29
MQTL2A.1	2A	Yr17/Lr37
MQTL2B.1	2B	Yr44
MQTL2B.3	2B	Yr5/Yr7
MQTL2D.2	2D	Yr54
MQTL3B.1	3B	Yr82
MQTL3B.1	3B	Yr30
MQTL3B.2	3B	Yr30
MQTL4D.2	4D	Yr28
MQTL5A.1	5A	Yr48
MQTL7B.4	7B	Yr52/Yr67
MQTL7D.1	7D	Yr18

来源 Origin	时间 Time	标记数目 No. of markers	标记类型 Marker types	MQTLs	置信区间 CI (cM)	平均置信区间 Mean CI (cM)	QTL数量 No. of Yr genes and QTLs	映射数量 No. of mappings	映射成功文献数 No. of citations
程宇坤^[42]	1997-2018	12,681	DArT, SSR, 55K SNP	12	0.03‒89.56	12.52	79Yr，342QTLs	194	58
Jan^[43]	2000‒2020	76,753	DArT, SSR, 90K SNP	61	0.02‒11.47	9.78	353QTLs	184	70
Kumar^[41]	2002‒2022	138,574	ITMI_SSR图谱 ITMI_SSR map 2004小麦SSR参考图谱 Wheat, Consensus SSR map, 2004 硬粒小麦参考图谱 an integrated map for durum wheat 9K SNP、55K SNP、90K SNP、660K SNP标记 wheat 9K 、55K、90K、660K SNP markers	67	0‒11.68	1.97	505QTLs	380	117
本研究	1997‒2024	138,574	ITMI_SSR图谱 ITMI_SSR map 2004小麦SSR参考图谱 Wheat, Consensus SSR map, 2004 硬粒小麦参考图谱 an integrated map for durum wheat 9K SNP、55K SNP、90K SNP、660K SNP标记 wheat 9K 、55K、90K、660K SNP markers	90	0.01‒24.60	7.09	1656QTLs	480	165

Meta-analysis of stripe rust resistance-associated traits and candidate gene identification in wheat

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