作物学报 ›› 2019, Vol. 45 ›› Issue (6): 829-838.doi: 10.3724/SP.J.1006.2019.84111
王瑞1,*,凌亮2,*,詹鹏杰1,于纪珍1,楚建强1,平俊爱1,*(
),张福耀1,*(
)
Rui WANG1,*,Liang LING2,*,Peng-Jie ZHAN1,Ji-Zhen YU1,Jian-Qiang CHU1,Jun-Ai PING1,*(
),Fu-Yao ZHANG1,*(
)
摘要:
用分蘖与主茎株高一致的高粱品系K35-Y5与分蘖明显高于主茎的高粱恢复系1383杂交, F1自交获得F2分离群体, 构建两混池, 采用BSA (bulked segregation analysis)和SLAF (specific length amplified fragment sequencing)技术将高粱分蘖与主茎株高一致基因定位。遗传分析表明, 分蘖与主茎株高一致性状由1对隐性核基因控制。参考已公布高粱基因组设计酶切方案, 构建SLAF文库并测序。对高粱参考基因组序列进行电子酶切预测, 确定限制性内切酶为Rsa I + Hae III, 酶切片段长度为364~414 bp; 测序Q30为91.70%, GC含量为45.79%, 达到测序要求; 与水稻的测序数据相比, 高粱的双端比对效率为93.35%, 酶切效率为90.60%, SLAF建库正常。共获得30.80 M reads, 开发出133,246个SLAF标签, 再通过分析SLAF标签的多态性, 检测到319,428个SNP位点。利用SNP-index法和Euclidean distance法及取两者交集进行关联分析, 最后得到一个关联区域, 位于第9染色体上的54,788,026~56,740,873区间内, 关联区域长度1.95 Mb。分析关联区域内的基因在2个亲本之间SNP, 对这些SNP进行变异的注释, 发现4个非同义突变的SNP。经验证, 这4个SNP位点和分蘖与主茎株高一致性状相关。对应到Sobic.009G197901.1、Sobic.009G213300.1和Sobic.009G221200.1三个基因上, 这些基因可能是与性状直接相关的功能基因。
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