Acta Agronomica Sinica ›› 2024, Vol. 50 ›› Issue (4): 897-813.doi: 10.3724/SP.J.1006.2024.31046
• CROP GENETICS & BREEDING·GERMPLASM RESOURCES·MOLECULAR GENETICS • Previous Articles Next Articles
WANG Tian-Ning1(
), FENG Ya-Lan2, JU Ji-Hao1, WU Yi1, ZHANG Jun1, MA Chao1,*(
)
| [1] |
Feng K, Hou X L, Xing G M, Liu J X, Duan A Q, Xu Z S, Li M Y, Zhuang J, Xiong A S. Advances in AP2/ERF super-family transcription factors in plant. Crit Rev Biotechnol, 2020, 40: 750-776.
doi: 10.1080/07388551.2020.1768509 pmid: 32522044 |
| [2] |
Claus S, Michael B. The regulation of transcription factor activity in plants. Trends Plant Sci, 1998, 3: 378-383.
doi: 10.1016/S1360-1385(98)01302-8 |
| [3] |
Karam B S, Rhonda C F, Luis O. Transcription factors in plant defense and stress responses. Curr Opin Plant Biol, 2002, 5: 430-436.
doi: 10.1016/s1369-5266(02)00289-3 pmid: 12183182 |
| [4] |
Du W X, Yang J F, Li Q, Su Q, Yi D X, Pang Y Z. Genome-wide identification and characterization of growth regulatory factor family genes in Medicago. Int J Mol Sci, 2022, 23: 6905.
doi: 10.3390/ijms23136905 |
| [5] |
Wang F D, Qiu N W, Ding Q, Li J J, Zhang Y H, Li H Y, Gao J W. Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp. pekinensis). BMC Genom, 2014, 15: 807.
doi: 10.1186/1471-2164-15-807 |
| [6] |
van der Knaap, Kim J H, Kende H. A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol, 2000, 122: 695-704.
doi: 10.1104/pp.122.3.695 pmid: 10712532 |
| [7] |
Kim J H, Choi D, Kende H. The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J, 2003, 36: 94-104.
doi: 10.1046/j.1365-313X.2003.01862.x |
| [8] |
Zhang D F, Li B, Jia G Q, Zhang T F, Dai J R, Li J S, Wang S C. Isolation and characterization of genes encoding GRF transcription factors and GIF transcriptional coactivators in maize (Zea mays L.). Plant Sci, 2008, 175: 809-817.
doi: 10.1016/j.plantsci.2008.08.002 |
| [9] |
Choi D, Kim J H, Kende H. Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L.). Plant Cell Physiol, 2004, 45: 897-904.
doi: 10.1093/pcp/pch098 |
| [10] |
Huang W D, He Y Q, Yang L, Lu C, Zhu Y X, Sun C, Ma D F, Yin J L. Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum. PeerJ, 2021, 9: e10701.
doi: 10.7717/peerj.10701 |
| [11] |
Yi W, Luan A P, Liu C Y, Wu J, Zhang W, Zhong Z Q, Wang Z P, Yang M Z, Chen C J, He Y H. Genome-wide identification, phylogeny, and expression analysis of GRF transcription factors in pineapple (Ananas comosus). Front Plant Sci, 2023, 14: 1159223.
doi: 10.3389/fpls.2023.1159223 |
| [12] |
Zan T, Zhang L, Xie T T, Li L Q. Genome-Wide identification and analysis of the growth-regulating factor (GRF) gene family and GRF-Interacting factor family in Triticum aestivum L. Biochem Genet, 2020, 58: 1-20.
doi: 10.1007/s10528-019-09927-z |
| [13] |
Kim J H, Kende H. A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Proc Natl Acad Sci USA, 2004, 101: 13374-13379.
doi: 10.1073/pnas.0405450101 |
| [14] |
Kim J H. Biological roles and an evolutionary sketch of the GRF-GIF transcriptional complex in plants. BMB Rep, 2019, 52: 227-238.
pmid: 30885290 |
| [15] |
Liang G, He H, Li Y, Wang F, Yu D Q. Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis. Plant Physiol, 2014, 164: 249-258.
doi: 10.1104/pp.113.225144 pmid: 24285851 |
| [16] |
Liu X, Guo L X, Jin L F, Liu Y Z, Liu T, Fan Y H, Peng S A. Identification and transcript profiles of citrus growth-regulating factor genes involved in the regulation of leaf and fruit development. Mol Biol Rep, 2016, 43: 1059-1067.
doi: 10.1007/s11033-016-4048-1 pmid: 27491940 |
| [17] |
Kuijt S J H, Greco R, Agalou A, Shao J, Hoen C C J, Overnäs E, Osnato M, Curiale S, Meynard D, van Gulik R, de Faria M S, Atallah M, de Kam R J, Lamers G E M, Guiderdoni E, Rossini L, Meijer A H, Ouwerkerk P B F. Interaction between the growth-regulating factor and knotted1-like homeobox families of transcription factors. Plant Physiol, 2014, 164: 1952-1966.
doi: 10.1104/pp.113.222836 pmid: 24532604 |
| [18] |
Li S C, Gao F Y, Xie K L, Zeng X H, Cao Y, Zeng J, He Z S, Ren Y, Li W B, Deng Q M, Wang S Q, Zheng A P, Zhu J, Liu H N, Wang L X, Li P. The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice. Plant Biotechnol J, 2016, 14: 2134-2146.
doi: 10.1111/pbi.12569 pmid: 27107174 |
| [19] |
Wang P, Xiao Y, Yan M, Yan Y, Lei X J, Di P, Wang Y P. Whole- genome identification and expression profiling of growth- regulating factor (GRF) and GRF-interacting factor (GIF) gene families in Panax ginseng. BMC Genom, 2023, 24: 334.
doi: 10.1186/s12864-023-09435-w |
| [20] |
Zhang S W, Li G G, Wang Y D, Anwar A, He B, Zhang J W, Chen C M, Hao Y W, Chen R Y, Song S W. Genome-wide identification of BcGRF genes in flowering Chinese cabbage and preliminary functional analysis of BcGRF8 in nitrogen metabolism. Front Plant Sci, 2023, 14: 1144748.
doi: 10.3389/fpls.2023.1144748 |
| [21] |
Yarra R, Krysan P J. GRF-GIF duo and GRF-GIF-BBM: novel transformation methodologies for enhancing regeneration efficiency of genome-edited recalcitrant crops. Planta, 2023, 257: 60.
doi: 10.1007/s00425-023-04096-1 pmid: 36801980 |
| [22] |
Liu Y T, Guo P, Wang J, Xu Z Y. Growth-regulating factors: conserved and divergent roles in plant growth and development and potential value for crop improvement. Plant J, 2022, 113: 1122-1145.
doi: 10.1111/tpj.v113.6 |
| [23] |
Daniela L, Javier F P. MicroRNA miR396, GRF transcription factors and GIF co-regulators: a conserved plant growth regulatory module with potential for breeding and biotechnology. Curr Opin Plant Biol, 2020, 53: 31-42.
doi: S1369-5266(19)30077-9 pmid: 31726426 |
| [24] |
Montenegro J D, Golicz A A, Bayer P E, Hurgobin B, Lee H, Chan C K, Visendi P, Lai K, Doležel J, Batley J, Edwards D. The pangenome of hexaploid bread wheat. Plant J, 2017, 90: 1007-1013.
doi: 10.1111/tpj.2017.90.issue-5 |
| [25] |
Etienne P, Pierre S, Jérôme S, Cyrille S, Frédéric C, Philippe L, Abraham K, Monika M, Shahryar K, Wolfgang S, Evans L, Daryl S, Andrzej K, Michael A, Sonia V, Hélène B, Kellye E, Rudi A, Jan S, Hana S, Jaroslav D, Michel B, Catherine F. A physical map of the 1-Gigabase bread wheat chromosome 3B. Science, 2008, 322: 101-104.
doi: 10.1126/science.1161847 pmid: 18832645 |
| [26] |
Zhang M, Qiu X B. Genetic basis of genome size variation of wheat. Funct Integr Genomic, 2023, 23: 285-285.
doi: 10.1007/s10142-023-01194-x pmid: 37648783 |
| [27] |
El B M, Murat F, Veyssiere M, Molinier M, Flores R, Burlot L, Alaux M, Quesneville H, Pont C, Salse J. Reconciling the evolutionary origin of bread wheat (Triticum aestivum). New Phytol, 2017, 213: 1477-1486.
doi: 10.1111/nph.14113 pmid: 27551821 |
| [28] | 魏益民. 中国小麦的起源、传播及进化. 麦类作物学报, 2021, 41: 305-309. |
| Wei Y M. Origin, spread and evolution of wheat in China. J Triticeae Crops, 2021, 41: 305-309. (in Chinese with English abstract) | |
| [29] |
Chen F, Yang Y Z, Luo X F, Zhou W G, Dai Y J, Zheng C, Liu W G, Yang W Y, Shu K. Genome-wide identification of GRF transcription factors in soybean and expression analysis of GmGRF family under shade stress. BMC Plant Biol, 2019, 19: 1-13.
doi: 10.1186/s12870-018-1600-2 |
| [30] |
Chen H L, Ge W N. Identification, molecular characteristics, and evolution of GRF gene family in foxtail millet (Setaria italica L.). Front Genet, 2022, 12: 727674.
doi: 10.3389/fgene.2021.727674 |
| [31] |
Tamura K, Stecher G, Kumar S. MEGA11: molecular evolutionary genetics analysis version 11. Mol Biol Evol, 2021, 38: 3022-3027.
doi: 10.1093/molbev/msab120 pmid: 33892491 |
| [32] |
Chen C J, Chen H, Zhang Y, Thomas H R, Margaret H F, He Y H, Xia R. TBtools: an integrative toolkit developed for interactive analyses of big biological data. Mol Plant, 2020, 13: 1194-1202.
doi: S1674-2052(20)30187-8 pmid: 32585190 |
| [33] |
Li C, Li Q G, Dunwell J M, Zhang Y M. Divergent evolutionary pattern of starch biosynthetic pathway genes in grasses and dicots. Mol Biol Evol, 2012, 29: 3227-3236.
pmid: 22586327 |
| [34] | Timothy L B, Charles E. Fitting a Mixture Model by Expectation Maximization to Discover Motifs in Biopolymers. Menlo Park, California: AAAI Press, 1994. pp 28-36. |
| [35] |
Wang Y P, Tang H B, Debarry J D, Tan X, Li J P, Wang X Y, Lee T H, Jin H Z, Marler B, Guo H, Kissinger J C, Paterson A H. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res, 2012, 40: e49.
doi: 10.1093/nar/gkr1293 |
| [36] |
Khadiza K, Arif H K R, Park J, Ujjal K N, Chang K K, Ki-Byung L, Ill S N, Mi-Young C, Hikmet B. Molecular characterization and expression profiling of tomato GRF transcription factor family genes in response to abiotic stresses and phytohormones. Int J Mol Sci, 2017, 18: 1056.
doi: 10.3390/ijms18051056 |
| [37] |
Noon J B, Hewezi T, Baum T J. Homeostasis in the soybean miRNA396-GRF network is essential for productive soybean cyst nematode infections. J Exp Bot, 2019, 70: 1653-1668.
doi: 10.1093/jxb/erz022 pmid: 30715445 |
| [38] | 张立全, 张浩林, 李丛丛, 姚磊, 魏建华, 张杰伟. 谷子GRF基因家族鉴定与分析. 西南农业学报, 2021, 34: 2340-2347. |
| Zhang L Q, Zhang H L, Li C C, Yao L, Wei J H, Zhang J W. Genome-wide analysis and identification of GRF gene family in foxtail millet (Setaria italica). Southwest China J Agric Sci, 2021, 34: 2340-2347. (in Chinese with English abstract) | |
| [39] |
时丕彪, 何冰, 费月跃, 王军, 王伟义, 魏福友, 吕远大, 顾闽峰. 藜麦GRF转录因子家族的鉴定及表达分析. 作物学报, 2019, 45: 1841-1850.
doi: 10.3724/SP.J.1006.2019.94049 |
| Shi P B, He B, Fei Y Y, Wang J, Wang W Y, Wei F Y, Lyu Y D, Gu M F. Identification and expression analysis of GRF transcription factor family of Chenopodium quinoa. Acta Agron Sin, 2019, 45: 1841-1850. (in Chinese with English abstract) | |
| [40] |
马超, 宋鹏, 尚申申, 杨夏夏, 杨金华, 韩群威, 李记民, 冯雅岚. 二穗短柄草GRFs基因家族的鉴定及表达模式分析. 核农学报, 2020, 34: 1152-1162.
doi: 10.11869/j.issn.100-8551.2020.06.1152 |
| Ma C, Song P, Shang S S, Yang X X, Yang J H, Han Q W, Li J M, Feng Y L. Whole genome identification and analysis of GRFs gene family in Brachypodium distachyon. Acta Agric Nucl Sci, 2020, 34: 1152-1162. (in Chinese with English abstract) | |
| [41] |
Jiao Y N, Wickett N J, Ayyampalayam S, Chanderbali A S, Landherr L, Ralph P E, Tomsho L P, Hu Y, Liang H Y, Soltis P S, Soltis D E, Clifton S W, Schlarbaum S E, Schuster S C, Ma H, Leebens-Mack J, de Pamphilis C W. Ancestral polyploidy in seed plants and angiosperms. Nature, 2011, 473: 97-100.
doi: 10.1038/nature09916 |
| [42] |
赵旭博, 李爱丽, 毛龙. 植物多倍化过程中小分子RNA调控基因表达机制研究进展. 作物学报, 2013, 39: 1331-1338.
doi: 10.3724/SP.J.1006.2013.01331 |
|
Zhao X B, Li A L, Mao L. Progress on gene regulatory mechanisms by small RNAs during plant poly-ploidization. Acta Agron Sin, 2013, 39: 1331-1338. (in Chinese with English abstract)
doi: 10.3724/SP.J.1006.2013.01331 |
|
| [43] |
Panchy N, Lehti-Shiu M, Shiu S H. Evolution of gene duplication in plants. Plant Physiol, 2016, 171: 2294-2316.
doi: 10.1104/pp.16.00523 pmid: 27288366 |
| [44] |
Kong F L, Wang J, Cheng L, Liu S Y, Wu J, Peng Z, Lu G. Genome-wide analysis of the mitogen-activated protein kinase gene family in Solanum lycopersicum. Gene, 2012, 499: 108-120.
doi: 10.1016/j.gene.2012.01.048 |
| [45] |
Tao Y, Wang F T, Jia D M, Li J T, Zhang Y M, Jia C G, Wang D P, Pan H Y. Cloning and functional analysis of the promoter of a stress-inducible gene (ZmRXO1) in maize. Plant Mol Biol Rep, 2015, 33: 200-208.
doi: 10.1007/s11105-014-0741-1 |
| [46] |
Lee S C, Kim S H, Kim S R. Drought inducible OsDhn1 promoter is activated by OsDREB1A and OsDREB1D. J Plant Biol, 2013, 56: 115-121.
doi: 10.1007/s12374-012-0377-3 |
| [47] |
Lee S J, Lee B H, Jung J H, Park S K, Song J T, Kim J H. Growth- regulating factor and GRF-interacting factor specify meristematic cells of gynoecia and anthers. Plant Physiol, 2018, 176: 717-729.
doi: 10.1104/pp.17.00960 |
| [1] | HU Run-Hui, WANG Jun-Cheng, SI Er-Jing, ZHANG Hong, LI Xing-Mao, MA Xiao-Le, MENG Ya-Xiong, WANG Hua-Jun, LIU Qing, YAO Li-Rong, LI Bao-Chun. Screening of drought and salt tolerant germplasm during wheat seedling stage and comprehensive evaluation of drought and salt tolerance [J]. Acta Agronomica Sinica, 2025, 51(9): 2371-2386. |
| [2] | YANG Ying-Cong, ZHANG Jun-Hao, TANG Yi-Zhe, QIAO Chang-Chang, WANG Peng-Bo, HUANG Ming, XU Guo-Wei, WANG He-Zheng. Effects of straw returning and phosphorus application rates on grain starch and the activities of starch synthesis-related enzymes in dryland wheat [J]. Acta Agronomica Sinica, 2025, 51(9): 2467-2484. |
| [3] | KONG De-Zhen, SANG Wei, NIE Ying-Bin, LI Wei, XU Hong-Jun, LI Jiang-Bo, LIU Peng-Peng, TIAN Xiao-Ming. Comparative analysis of metabolite changes during young panicle development in wheat AL type cytoplasmic male serile line and homologous maintainers [J]. Acta Agronomica Sinica, 2025, 51(9): 2454-2466. |
| [4] | LI Yun-Xiang, GUO Qian-Qian, HOU Wan-Wei, ZHANG Xiao-Juan. Genome-wide association analysis of drought resistance traits in wheat seedlings introduced from ICARDA [J]. Acta Agronomica Sinica, 2025, 51(9): 2387-2398. |
| [5] | LI Lu-Qi, CHENG Yu-Kun, BAI Bin, LEI Bin, GENG Hong-Wei. Genome-wide association analysis of stomatal-related traits in wheat leaves [J]. Acta Agronomica Sinica, 2025, 51(9): 2266-2284. |
| [6] | YANG Ting-Ting, CHEN Juan, ABDUL Rehman, LI Jing, YAN Su-Hui, WANG Jian-Lai, LI Wen-Yang. Effects of weak light post-anthesis on dry matter accumulation and translocation, grain yield, and starch quality in soft wheat [J]. Acta Agronomica Sinica, 2025, 51(8): 2204-2219. |
| [7] | YAN Zhe-Lin, REN Qiang, FAN Zhi-Long, YIN Wen, SUN Ya-Li, FAN Hong, HE Wei, HU Fa-Long, YAN Li-Juan, CHAI Qiang. Postponed nitrogen application optimizes interspecific interactions and enhances nitrogen use efficiency in wheat-maize intercropping systems in an oasis irrigation region [J]. Acta Agronomica Sinica, 2025, 51(8): 2190-2203. |
| [8] | WANG Yao-Kuo, WANG Wen-Zheng, ZHANG Min, LIU Xi-Wei, YANG Min, LI Hao-Yu, ZHANG Ling-Xin, YAN Yan-Fei, CAI Rui-Guo. Effects of water and nitrogen treatments on GMP synthesis and flour processing quality of winter wheat grain [J]. Acta Agronomica Sinica, 2025, 51(8): 2176-2189. |
| [9] | JIANG Peng, WU Lei, HUANG Qian-Nan, LI Chang, WANG Hua-Dun, HE Yi, ZHANG Peng, ZHANG Xu. Exploring the breeding utilization of the dwarfing gene Rht-D1 in wheat in the middle and lower reaches of the Yangtze River [J]. Acta Agronomica Sinica, 2025, 51(8): 2077-2086. |
| [10] | CAI Jin-Shan, LI Chao-Nan, WANG Jing-Yi, LI Ning, LIU Yu-Ping, JING Rui-Lian, LI Long, SUN Dai-Zhen. Genome-wide association study of root traits in wheat seedlings and identification of a superior allele at TaSRL-3B [J]. Acta Agronomica Sinica, 2025, 51(8): 2020-2032. |
| [11] | ZHANG Fei-Fei, HE Wan-Long, JIAO Wen-Juan, BAI Bin, GENG Hong-Wei, CHENG Yu-Kun. Meta-analysis of stripe rust resistance-associated traits and candidate gene identification in wheat [J]. Acta Agronomica Sinica, 2025, 51(8): 2111-2127. |
| [12] | SONG Gai-Li, WANG Lu-Qian, QU Ke-Fei, TANG Jian-Wei, DONG Chun-Hao, HUANG Zhen-Pu, GAO Yan, NIU Ji-Shan, YIN Gui-Hong, LI Qiao-Yun. Effect of Bipolaris sorokiniana-induced black point disease on starch content, particle size distribution, and pasting properties of medium-gluten wheat [J]. Acta Agronomica Sinica, 2025, 51(8): 2164-2175. |
| [13] | GAO Meng-Juan, ZHAO He-Ying, CHEN Jia-Hui, CHEN Xiao-Qian, NIU Meng-Kang, QIAN Qi-Run, CUI Lu-Fei, XING Jiang-Min, YIN Qing-Miao, GUO Wen, ZHANG Ning, SUN Cong-Wei, YANG Xia, PEI Dan, JIA Ao-Lin, CHEN Feng, YU Xiao-Dong, REN Yan. Mapping and identification of a novel sharp eyespot resistance locus Qse.hnau-5AS and its candidate genes in wheat [J]. Acta Agronomica Sinica, 2025, 51(8): 2240-2250. |
| [14] | LU Xiang-Qian, FU Yu-Jie, ZHAO Jun-Heng, ZHENG Nan-Nan, SUN Nan-Nan, ZHANG Guo-Ping, YE Ling-Zhen. Characterization of spike morphological traits at optimal sampling stage and screening of high-culturability genotypes in wheat anther culture [J]. Acta Agronomica Sinica, 2025, 51(8): 2033-2047. |
| [15] | WANG Tian-Yi, YANG Xiu-Juan, ZHAO Jia-Jia, HAO Yu-Qiong, ZHENG Xing-Wei, WU Bang-Bang, LI Xiao-Hua, HAO Shui-Yuan, ZHENG Jun. Gliadin diversity and its effects on flour quality in wheat from Shanxi province, China [J]. Acta Agronomica Sinica, 2025, 51(7): 1784-1800. |
|
||