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Acta Agronomica Sinica ›› 2023, Vol. 49 ›› Issue (8): 2025-2038.doi: 10.3724/SP.J.1006.2023.22051

• CROP GENETICS & BREEDING · GERMPLASM RESOURCES · MOLECULAR GENETICS •     Next Articles

Identification of OsGMS2 and construction of seed production system for genic male sterile line in rice

TANG Jie1(), LONG Tuan2(), WU Chun-Yu1, LI Xin-Peng1, ZENG Xiang1, WU Yong-Zhong1, HUANG Pei-Jin1,*()   

  1. 1 Hainan Bolian Technology Co., Ltd., Haikou 570125, Hainan, China
    2 College of Tropical Crops, Hainan University, Haikou 570208, Hainan, China
  • Received:2022-09-18 Accepted:2023-02-10 Online:2023-08-12 Published:2023-03-13
  • Contact: HUANG Pei-Jin E-mail:jesontom@126.com;longtuan2001@aliyun.com;ricetj@126.com
  • About author:First author contact:**Contributed equally to this work
  • Supported by:
    Open Project of the State Key Laboratory of Rice Biology, China Rice Research Institute(20190203)

Abstract:

Male sterility is the basis for application of crop heterosis. The common nuclear male sterile mutant osgms2 was isolated from a mutant library created by 60Co-γ-treated indica cultivar 93-11. The male of the mutant was completely aborted, the female was nomal, and other agronomic characters were consistent with those of the wild type. Genetic analyses indicated that the male sterility phenotype was stably controlled by a single recessive gene. The OsGMS2 gene was fine-mapped within the 86 kb physical interval between two molecular markers S3b and 4826 on the long arm of chromosome 4 with a mapping population of osgms2 and Minghui 63. Further sequencing found the gene LOC_Os04g48490, encoding a fasciclin-like arabinogalactan protein, had a 9-bp deletion at position 118 to 126 from start codon of translation, resulting in three codons mutation. The osgms2 gene was a novel allele of OsFLA1. Subsequent gene knockout and genetic complementation experiments in Zhonghua 11 background confirmed the function of the gene. Real-time quantitative PCR (qPCR) analyses showed that the gene was expressed in all tissues, with the highest level at the flowering and immature seed stages. Alignment analyses revealed that the protein sequence was conserved in different species. By creating the OsGMS2-T maintainer, seed production of the common sterile line was achieved. The identification of the allelic mutant osgms2 provides the new materials for the study on rice nuclear male sterility and application of heterosis.

Key words: rice, genic male sterile, osgms2, gene mapping, OsGMS2-T maintainer line

Table 1

List of primers for gene mapping"

引物名称
Primer name
上游引物
Forward primer (5°-3°)
下游引物
Reverse primer (5°-3°)
RM17332 CGGTACATCACGGTATCAAATCG TAAATGCTGGAGCGATGCTAACC
RM280 GTGCTCTCCATGTCGGATTATGC CAAGGCAACAAGATTGGTTAGTGG
RM17351 ATAAAGGAGGAGGGCCTCAGATGG CACGGTTTGGAGGTTGGAAGC
RM17352 GCTTGGCATCTGCTTCTGTTGTTGG CTCGCTGCTGATCGAGGTGTCG
RM303 ATCGATGTAGGTAGAGGGACACC CAGATCTAGTCGACATGGTTGG
4826 ACACCATCTCTCTTCTTTTTCTAT ATATGGGTAGGTTTGGATATTCG
S4b GTGTGTGTGAGTAAAATCCTAGTGCA
AAAAAGTGTGTGTGAGTAAAATCCTAGAGCC
ATTTGTACTCCTATGTTTAGAATAGC
S3b ACAAATATATAGCAAAATCGGTGACC
AAAAAACAAATATATAGCAAAATCGGTTACG
GTGGTTTTGTGGATGTTTTGTAACT
S2 AAGTATTTGTAATGCACTATGTAAAGGT
AAAAAAAGTATTTGTAATGCACTATGTAATGGC
TTAAGAGCACACACTTCCAATAATATGT
S1 CTGGGCGCGGTGCGGCGGGCGAGGC
AAAAACTGGGCGCGGTGCGGCGGGCGTGGT
CCGCCTCAGCGCCACCGCCAAGCTGA
S8 AAGTTGTGTTTAGCACTATGTTATTACG
AAAAAAAGTTGTGTTTAGCACTATGTTATGACA
TTTAGCATAATAACTACTATTCATCATT
S10 GCAGGAGACACTTGGTGCCGCCTCTC
AAAAAGCAGGAGACACTTGGTGCCGCCACTT
GCAGATTATTTTCGGTGGGTCCCGTCTC

Table 2

List of primers for gene cloning"

引物名称
Primer name
上游引物
Forward primer (5°-3°)
下游引物
Reverse primer (5°-3°)
LOC_Os04g48490_1 AAACAGAAAGCCCCAATG TGCCGCAGTACGCGCCCAAG
LOC_Os04g48490_2 TTGTCCATGCCGGTGTCCAT GGTCACGGCACAAACTCA
InD48490 GCTCCGGCTGTTGATCT GCCTGCTCTTCCTCCTG
GAPDH-RT GAATGGCTTTCCGTGTT CAAGGTCCTCCTCAACG
T1-sg GCGGTCGGTGGCGGCCATGG
SP CCCGACATAGATGCAATAACTTC GCGCGGTGTCATCTATGTTACT
B1 AAACCCACGCCCAGAAA GCCAGGAGGAAGAGCAG
3148 HB CgcgtttcgaaatttTGATTTCTTCATCGCACT GtcgcgatcgcatgcACAACATGGTGCAACAGTG

Fig. 1

Phenotypic comparisons of wild type 93-11 and osgms2 A-F: plant (A), panicle (B), spikelets (C), spikelets after dehulling (D), anther (E), and pollen iodine staining (F) of 93-11 and osgms2. Bar: 10 cm (A), 1 cm (B), 2 mm (C, D), 1 mm (E), and 0.1 mm (F)."

Table 3

Genetic analyses of mutant osgms2"

杂交组合
Cross combination
异交结实率
Out-crossing seed-setting rate
F2 χ23:1 χ20.05
可育株Fertile plants 不育株Sterile plants
osgms2/93-11 71.27%±14.67% 57 13 0.85 3.841
osgms2/ZH11 62.94%±14.34% 80 16 0.57 3.841

Fig. 2

Fine mapping of osgms2 A: the preliminary mapping of osgms2 between marker RM303 and S10 on chromosome 4. B: the fine mapping of osgms2 in the 86 kb physical interval between markers S3b and 4826. C: the prediction of the 11 predictive gene, ORF11 marked in red is candidate gene. D: the structure of candidate gene LOC_Os04g48490 and the mutation site in osgms2 (The deletion of mutant AACAGCTAC leads to the deletion of Asn, Ser, and Tyr)."

Table 4

Predicted genes in target region"

序号
Serial number
基因
Gene name
功能注释
Function annotation
ORF1 LOC_Os04g48390 SPX-Major Facility Superfamily (MFS) protein
ORF2 LOC_Os04g48400 HOTHEAD precursor
ORF3 LOC_Os04g48410 Copper chaperone for superoxide dismutase
ORF4 LOC_Os04g48416 OsSub45-putative subtilisin homologue
ORF5 LOC_Os04g48440 The expressed protein
ORF6 LOC_Os04g48450 The expressed protein
ORF7 LOC_Os04g48460 Cytochrome P450
ORF8 LOC_Os04g48470 The expressed protein
ORF9 LOC_Os04g48480 The exostosin family domain containing protein
ORF10 LOC_Os04g48484 The expressed protein
ORF11 LOC_Os04g48490 The fasciclin-like arabinogalactan protein

Fig. 3

Co-segregation analysis of osgms2 mutants The osgms2 amplified a 140 bp product; MH63 amplified a 149 bp product; the size of PCR products of F2 fertile plants was either 149 bp, or 149 bp, and 140 bp; all PCR products of F2 sterile plants were 140 bp in length."

Fig. 4

Knockout and genetic complementation of mutant gene A: knockout vector target sequence and sequencing results of homozygous mutant cr-osgms2-3, the black bold underlined base is the PAM region, the red mark indicates AT base deletion; B: osgms2 genetic complemention vector construction map; C-F: plant (C), panicle (D), anther (E), and pollen iodine staining (F) of ZH11 and knockout homozygous strain cr-osgms2-3; G-J: plant (G), panicle (H), anther (I), and pollen iodine staining (J) of ZH11 and genetically complementary strain Com-osgms2. Bar: 10 cm (C), 2 mm (D)-(E), 0.1 mm (F), 10 cm (G), 2 mm (H)-(I), and 0.1 mm (J)."

Fig. 5

Alignment of amino acid sequence of OsGMS2"

Fig. 6

Relative expression levels of OsGMS2 genes in different tissues of rice"

Fig. 7

Sterile line breeding of OsGMS2 A: OsGMS2-T vector; B: OsGMS2 sterile line breeding process; C: left, wild type ZH11 (genotype Ms/Ms), middle, OsGMS2-T maintainer line (genotype ms/Ms-T), right, osgms2 sterile line (genotype ms/ms) pollen 1% iodine-potassium iodide staining. Bar: 0.1 mm; D: bright field (BF), fluorescence (FRFP), and merged OsGMS2-T maintainer seeds. Bar: 5 mm."

Fig. 8

Phenotype identification of OsGMS2-T maintainer line and osgms2 male sterile line in T1 generation A-B: plant and panicle of OsGMS2-T maintainer line (A) and the osgms2 male sterile line (B); C: OsGMS2-T maintainer seeds in fluorescence field; D-E: pollen 1% iodine potassium iodide staining of OsGMS2-T maintainer line (D) and osgms2 male sterile line (E). Bar: 10 cm (A), 5 cm (B), 1 cm (C), and 0.1 mm (D)-(E)."

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